3D Structure for MGV-GENOME-0253108_CDS_0057 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 82.95 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0253108_CDS_0057 1 AcrIE6 0.71 View Alignment MGV-GENOME-0253108_CDS_0057 M D -N E E D Y M E L C K L L A K L K F N L V K Q C I Y C F D N ------N E E L A Q S Y R E E ----I S K I D K F (60)
M E K+ L L +
AcrIE6 M N N D T E V L E Q Q I K A F E L L A D E L K D R L P T L E I L S P M Y T A V M V T Y D L I G K Q L A S R R A E L I E I
MGV-GENOME-0253108_CDS_0057 L C D I P ----I L I -K --G -E (79)
L + + +
AcrIE6 L E E Q Y P G H A A D L S I K N L C P
MGV-GENOME-0253108_CDS_0057 2 AcrIIC4 0.63 View Alignment MGV-GENOME-0253108_CDS_0057 M D -N E E D Y M ---------E -----------L C K -L -L -A -K -L -K F -N L V -K Q C -I Y C F -(60)
M + K + + F
AcrIIC4 M K I T S S N F A T I A T S E N F A -K L S V L P K N H R E P I K G -L -F -K -S -A -V E Q -F S -S A R D -F F K
MGV-GENOME-0253108_CDS_0057 --D N N E E L A Q -S Y R E E I S K I D K F L C D I P I L I ---K --G E (99)
+ ELA +E ++ + L + L+
AcrIIC4 N E N Y S K E L A E K F N K E A V N E A V E K L Q K A I D L A E K Q -G I Q F
MGV-GENOME-0253108_CDS_0057 3 AcrIE1 0.61 View Alignment MGV-GENOME-0253108_CDS_0057 M -D ----N E E D Y M -------E ----L ----C -K -L -L A -K -------L -K -F -N -L V K Q C (60)
M L +
AcrIE1 M E K K L S D A Q V A L V A A W R K Y P -D L R E S L E E A -A -S -I L -S L I V F Q A E T -L -S -D -Q -A N E L
MGV-GENOME-0253108_CDS_0057 -I Y C F D N -------N E E L A Q S Y R E E I S K I D K F L C D I ----P I -L I -K --G -E (112)
Y + + R + + + +
AcrIE1 A N Y I R R Q G L E E A E G A C R N I D I M R A K W V E V C G E V N Q H G I R V Y G D -A I -D R D V D
MGV-GENOME-0253108_CDS_0057 4 AcrIB2 0.55 View Alignment MGV-GENOME-0253108_CDS_0057 N /A (3)
N/A
AcrIB2 N /A
MGV-GENOME-0253108_CDS_0057 5 AcrIF23 0.54 View Alignment MGV-GENOME-0253108_CDS_0057 M D -N E E D ---Y M -----------------E ------------------L -----------(60)
M
AcrIF23 M T N F Q T W L D S A -D I P V Q Q N G Q W I D L E T G I A Y D P S Y N Y A A N T R R A S L S P R G I D A R A V A K T F
MGV-GENOME-0253108_CDS_0057 C K ------------L ---------------L A K ----L K F N L V K Q C I Y C F D N --------(120)
L+ +
AcrIF23 G -G R A L T G T A R Q K E -W A E K I R A E K V Q Q M N Q D Q A E M A C D P S G L L T A A K F W I E -N R N D S A Q E
MGV-GENOME-0253108_CDS_0057 ---N E E L A Q S Y R E E I --------S -K -I -D -K -F -L C -D -I -P -I L I K -G --E (173)
+ + +
AcrIF23 I A G F V M Q Q K A L L A Q H R S A K A A G Q A D -K -V -A -K -I A -A -E -Y -N A -L T A R W G F
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;