3D Structure for MGV-GENOME-0252181_CDS_0003 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 90.08 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0252181_CDS_0003 1 AcrIE6 0.72 View Alignment MGV-GENOME-0252181_CDS_0003 M E D F Q K ---R M C E E H D E L V A R L S K L N A A L K K D G F L Q K V G I A Q F T L M T K Q K A G M T S Y -L E A (60)
M + + L+ L L + ++ L KQ A +E+
AcrIE6 M N N D T E V L E Q Q I K A F E L L A D E L K D R L P T L E I L S P M Y T A V M V T Y D L I G K Q L A S R R A E L I E I
MGV-GENOME-0252181_CDS_0003 L E D R M R D M G I D A D Y V I E Q S K W L (82)
LE+ AD I +
AcrIE6 L E E Q Y P G H --A A D L S I K N L C -P
MGV-GENOME-0252181_CDS_0003 2 AcrIF23 0.62 View Alignment MGV-GENOME-0252181_CDS_0003 M E D F Q K R M C E ------E H D E --------L V A R L S K ----------L N A A L K ---K -D ---(60)
M FQ + L+
AcrIF23 M T N F Q T W L D S A D I P V Q Q N G Q W I D L E T G I A Y D P S Y -N Y A A N T R R A S L S P R G I D A R A V A K T F
MGV-GENOME-0252181_CDS_0003 --------G F -----L --------Q K V G ----I A Q -F -T L M T K -Q -K -A -G M -T -S Y L E A (120)
+ +E
AcrIF23 G G R A L T G T A -R Q K E W -A E K I R A E K V Q Q M N Q D Q A E -M -A C D P -S G -L -L -T A -A -K F W I E N
MGV-GENOME-0252181_CDS_0003 L E D R M R D M -G -I --------------------------D -A -D -Y -V -I E Q S K -W -L (177)
D + + W
AcrIF23 R N D S A Q E -I -A -G F V M Q Q K A L L A Q H R S A K A A G Q A D K V A K I -A -A -E -Y N A L T A R W G F
MGV-GENOME-0252181_CDS_0003 3 AcrIE1 0.56 View Alignment MGV-GENOME-0252181_CDS_0003 M E -D ---F -Q K R M C ------E --------E -H -D E ----L V A R L S K L N A A L K K D G -F -L Q (60)
ME Q +V + L+ + +
AcrIE1 M E K K L S D -A Q V A L V A A W R K Y P D L R E S L E E -A -A S -I L S L I V F Q A E T L S D Q A N E L A N -Y I R
MGV-GENOME-0252181_CDS_0003 K V G I A Q F T L M T K Q K A G M T S Y L E A L E D R M R D M G I -D A D Y V I E Q S K W L (106)
+ G+ ++ M + GI +I+
AcrIE1 R Q G L E E A E G A C R N I D I M R A K W V E V C G E V N Q H G I R V Y G D A I D R -D V D
MGV-GENOME-0252181_CDS_0003 4 AcrIIC4 0.55 View Alignment MGV-GENOME-0252181_CDS_0003 M E --D -F Q K R ------------M C E E ----H D E L V A R L -S K L N A -A L K K D G F L Q K V G I A Q (60)
M L + A
AcrIIC4 M K I T S S N F A T I A T S E N F A K L S V L P K N H R E P I K G L F K S A V E -Q F S S A R D -----------F
MGV-GENOME-0252181_CDS_0003 F -T L M T -K -Q K -A G M T -S Y L E -A L E -D -R M R -D -M -G -I -D -A -D -Y V I E Q S K W L (115)
F + + + Q
AcrIIC4 F K -N E -N -Y S -K E L -A E K F N -K E A V N -E -A V E -K -L -Q -K -A -I -D L A E K Q G I Q F
MGV-GENOME-0252181_CDS_0003 5 AcrIIA28 0.55 View Alignment MGV-GENOME-0252181_CDS_0003 M E --D ---F Q K R M C -E E H D E -L V A R L S K L N A A L K K D G F L Q K V G I A Q F T L M -T -K Q K A -G -(60)
M + + E + +
AcrIIA28 M K T I F T K K Q T E E L L N D I S I E K Q K E L F N S M H D F R S Q H A K E A R -I P G ----W S -D -K Y N K -L
MGV-GENOME-0252181_CDS_0003 M -T -S Y L E A L E D R M R D M G I D -A --D Y -V I E Q -S K --W -L (99)
L E+ +K
AcrIIA28 -E -K K M L S D F E E V T G I K Y D T L E S E L -I W D N L S N K F L Y N S
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;