3D Structure for MGV-GENOME-0250433_CDS_0002 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 96.61 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0250433_CDS_0002 1 AcrIE6 0.72 View Alignment MGV-GENOME-0250433_CDS_0002 M S -I -I -D V K R E Y ---N Y W L G R Y M K A E A F I N S S T E E V I E K H L E L F Y Q V V R E L S K L I D V Y F (60)
M+ + + + + + L
AcrIE6 M N N D T -E V L E Q Q I K A F E L L A D E L K D R L P T L E I -L S P M Y T A V M V T Y D L I G K Q L A S R R A E L I
MGV-GENOME-0250433_CDS_0002 K L T G K E M T S Y E K N N G F K -E -V (81)
+ K
AcrIE6 E I L E E Q Y P G H A A D L S I K N L C P
MGV-GENOME-0250433_CDS_0002 2 AcrIIC4 0.61 View Alignment MGV-GENOME-0250433_CDS_0002 M -S -I I D V K R E Y N Y W L G -R Y M K A E A F I N S S T E E V I E K H L E L F Y Q V V R E L S K L I ----D --(60)
M K+ + E LF ++V S +
AcrIIC4 M K I T S S N -F A T I A T S E -N -F A K L S V L P K ----N H R E P I K G L F K S A V E Q F S S A R D F F K N E N
MGV-GENOME-0250433_CDS_0002 ----V -Y F -K L -T -G ---K E M -------T S Y E K N N G F -K -E V (102)
K E +
AcrIIC4 Y S K E -L A -E K -F -N K E A V N E A V E K L Q K A I D L A E K Q -G I -Q -F
MGV-GENOME-0250433_CDS_0002 3 AcrIE1 0.58 View Alignment MGV-GENOME-0250433_CDS_0002 M --S ----I I -D V -K ---R ----E ----Y -------N Y ----W L G -R Y M -K A E A F I N S S -(60)
M R + + + +
AcrIE1 M E K K L S D A Q -V A -L V A A W R K Y P D -L R E S L E E A A S I L S -L I V F Q A E T -L S D -Q A N E L A N Y I
MGV-GENOME-0250433_CDS_0002 T E E V I E K H L E -L F -Y Q V V -R E L -S K L I D V Y F K L T G K E M T S Y E K -N N G -F -K E -V (114)
+E + K ++V + ++
AcrIE1 R R Q -G L E E A E G -A C -R N I D I -M R A K W V E V C G E V -N Q H G I R V Y G D --A I -D R D V D
MGV-GENOME-0250433_CDS_0002 4 AcrIIA28 0.56 View Alignment MGV-GENOME-0250433_CDS_0002 M S ---I -I ----D V K -R E Y N Y W -L G -R Y M K A E A F I N S S T E --E V I E K H L E L F Y Q V V R E L S (60)
M ++ F ++ I +
AcrIIA28 M K T I F T K -K Q T E E L L N D I S I E K Q K -E L F N S M H D F R S Q H A K E A -R I P ---G W S D K Y N K L E K
MGV-GENOME-0250433_CDS_0002 K L I D V Y F K L T G K E ---M T S Y E K -N N G -F K ---E V (94)
K + +TG S N K
AcrIIA28 K M L S D F E E V T G I K Y D T L E S E L I W D N L S N K F L Y N S
MGV-GENOME-0250433_CDS_0002 5 AcrIF23 0.55 View Alignment MGV-GENOME-0250433_CDS_0002 M -S I I -D V K --R --------E ---Y --------N --------------------------(60)
M + +
AcrIF23 M T N F Q T W L D S A D I P V Q Q N G Q W I D L E T G I A Y D P S Y N Y A A N T R R A S L S P R G I D A R A V A K T F G
MGV-GENOME-0250433_CDS_0002 -----------Y W -L G -R Y M K A E A F I N S S T E E V -I E -K -H L E L F ----Y Q V V R E L S K L I D (120)
W N+ + E + + + +
AcrIF23 G R A L T G T A R Q K E W A E -K I R A E K V Q Q M N Q D Q A E -M A -C -D -P S G L L T A A K F W I E N R N D S A Q
MGV-GENOME-0250433_CDS_0002 V Y F K -L T -G ----K -------E M --------T S Y E K N -N G F K -E --V (167)
N
AcrIF23 E I A -G F -V -M Q Q K A L L A Q H R S A K A A G Q A D K V A K I A A E Y N A L T A R W G F
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;