3D Structure for MGV-GENOME-0236602_CDS_0002 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 94.59 ;
Download
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0236602_CDS_0002 1 AcrIIA21 0.75 View Alignment MGV-GENOME-0236602_CDS_0002 V S ------Y -F D T I Y A D ---T F L P H R A I P V Y M Y L K D R S G S ---------T -G -S C W P G I K (60)
+ D + L + I VY LKDR+ +
AcrIIA21 M D Y D N E N Y L I P K I L L Q D D F Y S S L S A K D I L V Y A V L K D R Q I E A L E K G W I D T D G S I Y L N F K L I
MGV-GENOME-0236602_CDS_0002 T I D K D L N L S R S T V K R A L T D L E Q H G Y L A K L P R Y R P N G S N T S N L Y T L --L (108)
+ K + SR+T + + LE + + G + + +
AcrIIA21 E L A K M F S C S R T T M I D V M Q R L E E V N L I E R E R V D V F Y G Y S L P Y K T Y I N E V
MGV-GENOME-0236602_CDS_0002 2 AcrIA3 0.48 View Alignment MGV-GENOME-0236602_CDS_0002 V S Y ---F D T I Y A D ----T F --L P -H R A I -P V -Y M Y -L K -D R S G -S T G S C -W P G I K T I D K -(60)
S + L + +G P +
AcrIA3 M S F Y I M Y I K V K E -M S E Q K Q I S L R S K -Q K E L -L Q R -F -F E I A E V D E N G D L C I P L Y D S S G D L
MGV-GENOME-0236602_CDS_0002 --D -L -N L S R S T V K -R A L -T -D L E -Q -H G Y L A K L P R Y R P N G S N -T -------------S - (120)
+ K
AcrIA3 T L -F K Q D S R ---K -Y Q M -Y -A Y F -R -I L R L I K K Q I F F I K V K K -V K R D K K F L C M H S N V I -D
MGV-GENOME-0236602_CDS_0002 N L Y T L --L (128)
++ ++
AcrIA3 Q V K S V L E S
MGV-GENOME-0236602_CDS_0002 3 AcrIE5 0.45 View Alignment MGV-GENOME-0236602_CDS_0002 V S -Y F D T I Y A D T F L P H R A I P V Y M Y -L K D R S G S T G S C W P G I K T I D K D L -N L S R S T V K R A L T (60)
S + + Y R + R+
AcrIE5 M S N D ---R N G ------I I N Q I I D Y T ----------------------G -T D R D H A E R I Y E
MGV-GENOME-0236602_CDS_0002 D L E Q H G Y L A K L P -R -Y R P N G S N T ---S ---N L Y T L -L (97)
+L + +G +
AcrIE5 E L R A D D R I Y F D D S V G L D R Q G L L I R E D V D L M A V A A E I E
MGV-GENOME-0236602_CDS_0002 4 AcrVA3 0.44 View Alignment MGV-GENOME-0236602_CDS_0002 V -S ---Y -F D T I Y A --D -------T F ----------------------------------(60)
+ +I
AcrVA3 M V G K S K I D W Q S I D W T K T N A Q I A Q E C G R A Y N T V C K M R G K L G K S H Q G A K S P R K D K G I S R P Q P
MGV-GENOME-0236602_CDS_0002 -L ----------------------P ---H -R A I P V Y M Y L K -D R S G S T G S C W P G I K T I D K D (120)
L + + + ++ +
AcrVA3 H L N R L E Y Q A L A T A K A K A S P K A G R F E T N T K A K T W T L ---K -S -P ---D N -K T Y T F T N L M H F
MGV-GENOME-0236602_CDS_0002 L N L S R S T V K --R A L T -D L E -Q -H -G Y L A K --L P R Y R P -N -G S -N T --------S -N L Y T L (180)
+ + + G + + L +L
AcrVA3 V R T N P H L F D P D D -V V W R T -K -S -N G -V E W C R A S S G L A L -L A -K R -K K A P L S W K G W R L I S L
MGV-GENOME-0236602_CDS_0002 ----L (185)
AcrVA3 T K D N K
MGV-GENOME-0236602_CDS_0002 5 AcrIF16 0.43 View Alignment MGV-GENOME-0236602_CDS_0002 V S -----Y -F D T I Y A D -----T F -------------------------------------(60)
S +
AcrIF16 M S L S D K K E Q K E A Y L D A L R I A P L D R G V L K R I H A V N D N T L D K W L Y V A D R Y P T F R A C W E L W M F
MGV-GENOME-0236602_CDS_0002 ------------------L ----------------P H -R A I -P V Y M Y -L K ----D ----R (120)
+ Y +
AcrIF16 Q R K R R V L I S R K L H V L I N R S T N R T I E A F E K T Y P P E E R -V -V G K S -Y R D L -V T E K G E R S A N -
MGV-GENOME-0236602_CDS_0002 -S G S -T -G S C W P G I K T I D K D L -N L S R S T V K R A L T D L E Q H G Y L A K -L P R Y R P -N G S N -T -S (180)
G G+K + L S+ + G
AcrIF16 M Y I -I -N G -E V V G A K D A S I L L G Y ---S S Y N T L Y A K M K R L G I Q P G D D I ---S H L K P E K -R -
MGV-GENOME-0236602_CDS_0002 -N L Y T L -L (188)
AcrIF16 G -R K K E C S
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;