3D Structure for MGV-GENOME-0234429_CDS_0034 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 89.79 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0234429_CDS_0034 1 AcrIE1 0.72 View Alignment MGV-GENOME-0234429_CDS_0034 V K N S I E E D -M K -S -I -N K G L Y E L E D S Y E L H Q A R W A K R I F E N I K E K L D H I L -S E Y K R V L K E (60)
L ++ +
AcrIE1 M E K K ----L -S D -A -Q -V A L ---------------V A A W R K Y ----P D L R E ---------
MGV-GENOME-0234429_CDS_0034 N E E W D R K F C N L Q N L Y F -K -L Q D E -L -E -S K R K E Y Q E T Y K D V R E E L K E L R K -E N E E L -H -K (120)
+L + + ++
AcrIE1 ---------S L E E A -A S -I -L S L I -V -F ---------------Q A E ----T L S D Q -A -N -
MGV-GENOME-0234429_CDS_0034 -E T E R M K S L -D I Y K L V -E D W E T -G Q L I S I Q R V K D K I E E I Q I E Y N K L D K -E -V D -E Y I N D A (180)
+ + I I K E +
AcrIE1 E L A N Y I R R -Q G -----L -----E -------E A E G A C R N I D I M R A K W V -E -V C -G E V N Q --
MGV-GENOME-0234429_CDS_0034 N K -E L -S K Y Y E N K E K I -G -E M Q T L S W C I D N L Q E -L -L K K E D (221)
+ + D
AcrIE1 --H -G I -R ------V -Y -G -D ------------A -I D R D V D
MGV-GENOME-0234429_CDS_0034 2 AcrIE6 0.61 View Alignment MGV-GENOME-0234429_CDS_0034 V K N S I E E D M K S -I N K G L Y E L E D S Y E L H Q A R W A K R I F E N -I K E K L D H I L S E Y K R V L K E N E E (60)
N+ E +
AcrIE6 M -N N D T E V ---L -E -----------------------Q Q ---------------------
MGV-GENOME-0234429_CDS_0034 W D R K F C N L Q N L Y F K L Q D E L E S K R K E Y Q E T Y K D V R E E -L -K E L R K E N E E L H K -E T E R M K S L (120)
++ + L
AcrIE6 -----------I K A F E L L A D E L K D R -----------L -P -T L --------E I -----L --
MGV-GENOME-0234429_CDS_0034 D I Y K L V E D W E T G Q L I S I Q R V K D -K -I -E -E -I -Q -I -E -Y N -K -L -D -K -E -V D -E -Y -I (180)
I
AcrIE6 ------S -----------P M Y T A -V -M -V -T -Y -D -L -I G -K -Q -L -A -S -R R -A -E -L I
MGV-GENOME-0234429_CDS_0034 N D A N K E L S K Y Y E N K E -K I G E M Q T L S W C I D N L Q E L L K K E D (219)
+ ++
AcrIE6 E I L E E Q Y P G H ---A -A ----D L -------S I -K --N L C P
MGV-GENOME-0234429_CDS_0034 3 AcrIC3 0.58 View Alignment MGV-GENOME-0234429_CDS_0034 V K N S I E E D M K S I N K G L Y E L E D S Y E L H Q A R W A -K R I F E N I K -E K L D H I L S E Y K R V L K E N E -(60)
++ + +
AcrIC3 M S I Q V T S T ---N -G -------R -T ---V -N L E --------I ------------------E
MGV-GENOME-0234429_CDS_0034 E W D R K F C N L Q -N -L Y F K L Q D E L E S K R K E Y Q E T Y K D V R E E L K E L R K E N E E L H K E T E R M K S L (120)
+ D
AcrIC3 -L G S V V A S S -G -Q -V K F M A D K ---T -----------------------------------
MGV-GENOME-0234429_CDS_0034 D I Y K L V E -D W E T G Q L I S I Q R V K D K I E --E I Q I E Y N K L D K E V D E Y I N D A -N -K E L -S -K Y Y (180)
E+ + +IE + + EL
AcrIC3 -----D -R G L E S -R F L V P E A G N R R I E V A ----L T G R D L E A A N A L ----F -S -E L A -A -S V
MGV-GENOME-0234429_CDS_0034 E N -K -E K I G E -M -Q T L S W C I -D N L Q E L L K K E D (212)
E E E +++ +L
AcrIC3 E A T -N E M Y R E L -D A ----E R A -Q I N K A L -E -G
MGV-GENOME-0234429_CDS_0034 4 AcrIF23 0.56 View Alignment MGV-GENOME-0234429_CDS_0034 V K N S I E E D M K ---S -I N --K -G -L Y E L E D S Y E L H ------Q --A R W A K -R I F E N I K E K L D (60)
++ + +LE ++
AcrIF23 M -T N F Q T W L D S A D I P V -Q Q N G -Q W I D L E T G I A Y D P S Y N Y A -A N -----T -R R A S L S ---P
MGV-GENOME-0234429_CDS_0034 H I -L S E Y K R V L K E N E E W D R K F -C N L Q N L Y -F -K L Q D E L E S K R K E Y Q E T Y K D V R -E -E L K E (120)
+ + ++ + +R +
AcrIF23 R -G -I --------------D A R -A V A K T F G -G R A L T G T A R Q K E W A E K ----I R A -E K V Q Q
MGV-GENOME-0234429_CDS_0034 L R K E N E E L H K -E T E R M K S L D I Y K L V E D W E T G Q L I S I Q R V K D K I E E I Q I E Y N K L D K E V D E Y (180)
++ E ++ +K IE N E+
AcrIF23 M N Q D Q A E M A C D --------------------P S G L L T A A K F W I E N R ----N D S A Q E I A G F
MGV-GENOME-0234429_CDS_0034 I N D A N K E L S K Y Y E N K E K I G E M Q T L S W C I D N L Q E L L K K -E D (220)
+ +K L + +G + + + L +
AcrIF23 V M Q -Q K A L L A Q H R S A K A A G Q A D K V A K I A A E Y N A L T A R W G F
MGV-GENOME-0234429_CDS_0034 5 AcrIIA11 0.56 View Alignment MGV-GENOME-0234429_CDS_0034 V K N -S I E E D M K S I N K G L Y E L E D S Y E -L H Q A R W A K R I --F E N I K E K L D H I L -S E Y K R V L K E (60)
++ K D + D + +
AcrIIA11 M A D M T L R Q F C E R Y R K ----G -D F L -A -K D R ----E T Q I E ---A G W Y D W -F C -D ------D
MGV-GENOME-0234429_CDS_0034 N -E -E -W D R K F C N L Q N L Y F -K L Q D E L E -S -K R -K E Y Q E T Y K D V R E E L K E L R K E N E E L H K -(120)
+ + + +D + + + L +
AcrIIA11 -K -A -L -A G R L A K I W G I L K G I T S D Y I L D -N -Y R V W F K N N ----C P M V G P L Y D D -V R F E -P
MGV-GENOME-0234429_CDS_0034 E T E R M K S L D I Y K L V E D --W E T -----------G -Q L I S I Q R V K D K I E E I Q I -E Y N K L D -K (180)
E + ++ D + + +
AcrIIA11 L D E E Q R D E L Y F G V A I D D K R R E K K Y V I F T A R N D Y E N E C G F N N -V R E V R Q F I N G -W E D E L K N
MGV-GENOME-0234429_CDS_0034 E V D E Y I N D A N K -E L S K -Y -Y E -N K E K ----I G -E -M ---Q T -L -S W C I D N L -Q E L L K K E D (240)
+EK + + L K D
AcrIIA11 -----------E --E -F -Y K -A -R E K K R Q E M E E -A N N K F A E I -M Q R A D E I -L W N L -K E -D
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;