3D Structure for MGV-GENOME-0230912_CDS_0039 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 83.97 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0230912_CDS_0039 1 AcrIE6 0.72 View Alignment MGV-GENOME-0230912_CDS_0039 M G F W E P A K I D -K -D -I -Q V D N D R R I I A R L A K E K L E S Q A K K V N T R L E N Q R E K L K S I D Y S N S (60)
M + +K ++ +++L +++
AcrIE6 M -N N D ---T -E -V -L -E ----Q Q --------------I K A F E L L A D E L K D R L P T L E I L --
MGV-GENOME-0230912_CDS_0039 T K R A V T T A R S N Y D F T L K E L D S I K ----R -R -I D --------I -C N -E L L S (110)
T + +YD K L S + ++ L
AcrIE6 -S P M Y T A V M V T Y D L I G K Q L A S R R A E L I -E -I L E E Q Y P G H A A D L S I K N L C P
MGV-GENOME-0230912_CDS_0039 2 AcrIE1 0.70 View Alignment MGV-GENOME-0230912_CDS_0039 M G -F W -E P A K I -D K D I Q V D N D R R I I A R L A K E K L E S Q A K K V N T -R L E N Q R E K L K S I D Y S N S (60)
M + + D R + A L + L Q L + +
AcrIE1 M E K K L S D A Q V A L V A A W R K Y P D L R E S L E E A A S I L S L I V F Q -A E T -L S D Q A N E L A N Y I R R -Q
MGV-GENOME-0230912_CDS_0039 T K R A V T T A R S N Y D F T L K E L D S I K ----R R I D I C -N E L ----L -S (104)
+ A N D + + ++
AcrIE1 G L E E A E G A C R N I D I M R A K W V E V C G E V N Q H G I R V Y G D A I D R D -V D
MGV-GENOME-0230912_CDS_0039 3 AcrIIC4 0.63 View Alignment MGV-GENOME-0230912_CDS_0039 M G F W E P A K I D K D -I -Q -V D -N -D ---R R I -I A R -L A K E K L E S Q A K K V N T R L E N Q R E K L K S (60)
M + + + + +E + K + + R+ K+
AcrIIC4 M -K I T S S N ----F -A -T -I A T S E N F A K L S V -L P K N H R E P I K G L F K S A V E Q F S S A R D F F K N
MGV-GENOME-0230912_CDS_0039 I D Y S N S T K R A V T T A R S N Y D F T L K E L D S I K R R I D I C N E L L S (100)
Y S A + + L + ++
AcrIIC4 E N Y --S K E L A E K F N K E A V N E A V E K L Q K A I D L A E K Q G I Q -F
MGV-GENOME-0230912_CDS_0039 4 AcrIF23 0.62 View Alignment MGV-GENOME-0230912_CDS_0039 M G F -W ---E P A K ------------------I D K D I Q ------------------------(60)
M + A D +
AcrIF23 M T N F Q T W L D S A -D I P V Q Q N G Q W I D L E T G I A Y D P S Y N Y A A N T R R A S L S P R G I D A R A V A K T F
MGV-GENOME-0230912_CDS_0039 ----------V D -N --------D -R R I I A R ----L A -K -E K L E S -Q A -K -K V N -T R L E N Q (120)
+ S + +EN
AcrIF23 G G R A L T G T A R Q -K -E W A E K I R A -E K V Q Q M N Q D Q A E -M -A C D P -S G L -L -T A A -K F W I E N R
MGV-GENOME-0230912_CDS_0039 R E K L K S -I D Y S N ---S T K R A V T -T -A R -S -N -Y D -F -T -L -K E L D S I K R R I D I C N E L L -S (180)
+ + + I + +A+ + I + +
AcrIF23 N D S A -Q E I ---A G F V M Q Q K A L L A -Q H -R -S -A K -A A G -Q -A D K V A K I A A E Y N A L T A R W G F
MGV-GENOME-0230912_CDS_0039 5 AcrIC3 0.55 View Alignment MGV-GENOME-0230912_CDS_0039 M G F W E P A K ------I ----D -K -D -I -Q -V D N D R R I I A R L A K E -K L E S Q A K K V N ---T R L (60)
M + + A + + + + +
AcrIC3 M S I Q V T S T N G R T V N L E I E L -G -S -V -V -A S S G Q V K F M ---A -D K ----T D R G L E S R F -L V
MGV-GENOME-0230912_CDS_0039 E -N Q R E K L K S I D ---Y S -N S T K R A V T T A R S N Y D F T L K E L D S I K R R I D I C N E L L -S (115)
++ + + + + + + T + N +L
AcrIC3 P E A G N R R I E V A L T G R D L E -A A N A L F S E L A A S V E A T N E M Y R E L D A E R A Q I N K A L E G
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;