3D Structure for MGV-GENOME-0228994_CDS_0048 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 88.26 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0228994_CDS_0048 1 AcrIIA27 0.72 View Alignment MGV-GENOME-0228994_CDS_0048 M -I Y E V K V -R ---------V -V Q E G T V F V E A E T Q D E A K K T A T S D S V I S K T D F A D T I E Y Y A (60)
M + V V VEA + EA K A + S +
AcrIIA27 M K T F N I I V S E S A N L K E H S S E L V D N I I Y K V E A K N R R E A F K K A R E E Y S F S -S -K ---W K F N M
MGV-GENOME-0228994_CDS_0048 D E I ---Y -N A D S T V G D Q E V I K A K D V L (86)
++ N + +++ + +
AcrIIA27 R D L T A I -D N T H R R A W G R R Y L R V E E -A
MGV-GENOME-0228994_CDS_0048 2 AcrIE2 0.66 View Alignment MGV-GENOME-0228994_CDS_0048 M I Y -E V K V R -V V Q -E G -T V F V E A E ----T Q -D -E A -K -K -T -A T S ---D S V I S K T D F A D T (60)
M + R G V+A A + V +
AcrIE2 M N T Y L I D P R K N N D N S G E R F T V D A V D I T A A A K -S -A A -Q -Q -I L G E E F E G L V Y R E -T -G E -
MGV-GENOME-0228994_CDS_0048 I E Y -Y -A D E I Y N A D S -T ---V -G D Q -----E -V I K A K D V L (100)
+A ++ + L
AcrIE2 --S N -G -S G M F Q A Y H H L H G T -N R T E T T V G Y -P -F H V M E -L
MGV-GENOME-0228994_CDS_0048 3 AcrIE8 0.59 View Alignment MGV-GENOME-0228994_CDS_0048 M I Y E V K V R V V Q E G -T V F V E A E T Q D E A K K T A T S D S V I S K T D F A D T I E Y Y A D E I Y N A D S T V G (60)
M E E + +S Y D +D
AcrIE8 M T T I T I N -T Y D P E A R F N M S G E E A K E F F A F V E E Q A K V S ----G -F D V -Y Y D S C T Y V D E E S E
MGV-GENOME-0228994_CDS_0048 D -Q E V -I K A K D V L (73)
V
AcrIE8 -R F -V E K C F -Q N Y
MGV-GENOME-0228994_CDS_0048 4 AcrIC9 0.57 View Alignment MGV-GENOME-0228994_CDS_0048 M -I --Y E --V K -V -R V V Q E G -T V F V E A E T Q D E A K K T A T S D S V I S K T D F A D T I E Y Y A D E I Y (60)
M + F T ++ + + + + Y A+
AcrIC9 M E T K M T S F Y K I T -A Y -N S Q -A L Y F -W -G T D A D V D R Y V D W L N R -D R --E --I N V Y A A E A -I
MGV-GENOME-0228994_CDS_0048 N A D -S --T -V G D Q E V -----I ------K -A K D -V L (95)
G +V +
AcrIC9 P E A E W A Q -Y E G R D D V L S G E E C G W D D F M -S -A -E -A
MGV-GENOME-0228994_CDS_0048 5 AcrIIC1 0.55 View Alignment MGV-GENOME-0228994_CDS_0048 M I Y -E --V K V R V -V -Q -E G T V F V E A E ---T Q D -E -A K -K -T -A T S D S V I S K -T D F A -D T I (60)
M+ + + + + E D A D +
AcrIIC1 M A N K T Y K I G K N A G Y D G C G L C L A A I S E N E A I K V K -Y -L R -D -I -C P D Y --D G D D -K A E D W L
MGV-GENOME-0228994_CDS_0048 E Y Y A D -E I -Y N A D S T V G D --Q -E ---V -I K A ---K D -V L (99)
D A + L
AcrIIC1 R W G T D S R -V K A A A L E M E Q Y A Y T -S V G -M A S C W E F V -E -L
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;