3D Structure for MGV-GENOME-0228707_CDS_0056 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 90.20 ;
Download
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0228707_CDS_0056 1 AcrIIA21 0.87 View Alignment MGV-GENOME-0228707_CDS_0056 M S Q K F L K F T S E S L S A S Y I P F P R F L M E D -S L A G L S N D A K V L Y A L M L D R A S I S K V N G F L E T D (60)
M P+ L D LS ++YA+ DR G+++TD
AcrIIA21 M D -Y --D -------N E N Y L I P K I L L Q D D F Y S S L S A K D I L V Y A V L K D R Q I E A L E K G W I D T D
MGV-GENOME-0228707_CDS_0056 G T I R I Y F T V E Q A Q K K L H R S R Q C A T R I F H E L E F S G L I C R K K Q G L G K P A L I T L N Y P S N A K L I (120)
G+I + F + + K SR+ + LE LI R + + P
AcrIIA21 G S I Y L N F K L I E L A K M F S C S R T T M I D V M Q R L E E V N L I E R E R V -D -V F Y G -Y -S L P Y -K T --
MGV-GENOME-0228707_CDS_0056 Q P K K G S S I L S G (131)
AcrIIA21 Y -----I -N E V
MGV-GENOME-0228707_CDS_0056 2 AcrIA3 0.49 View Alignment MGV-GENOME-0228707_CDS_0056 M S Q K F L K F T S E S -L S A S Y I P F P R F L -M -E D S L A G L S N D A K V L Y A L M L D R A S I S K V N G F L E (60)
MS + L + K L + A +
AcrIA3 M S F Y I -M --Y I -K ----V K E ---M -S -E -Q K Q I S L R S K Q K E L L Q R F F E I A E V D -------
MGV-GENOME-0228707_CDS_0056 -T D G T I R I -Y -F T V E Q A Q K K L -H R ---S R Q -C A T R I F H E L E F -S -G L I C R K K Q G -L G K P A (120)
G + I + ++ RI + + + I KK
AcrIA3 E -N G D L C I P L Y D S S G D L T L F -K Q D S R K Y Q M Y A Y F R I L R L I K -K Q I F F I K V K K V -K -R D K K
MGV-GENOME-0228707_CDS_0056 L I T L N Y P S N A K L I Q P -K K G S S I L S G (145)
+ + K S+L
AcrIA3 F L C M H S N V -I D Q ---V -K --S V L E S
MGV-GENOME-0228707_CDS_0056 3 AcrIE5 0.39 View Alignment MGV-GENOME-0228707_CDS_0056 M S Q K F L K F T S E S L S A S Y I P F P R F L M E D S -L A G L S N D A K V L Y A L M L D R A S I S K V N G F L E T D (60)
MS + +
AcrIE5 M S ------------N D R N G I I N Q I I D -Y T -------------------------------
MGV-GENOME-0228707_CDS_0056 G T I R I Y F T V E Q A Q K K L H R S R Q C A T R I F H E L E F S G L I C R K K Q G L G K P A L I T L N Y P S N A K L I (120)
R A RI EL I + + + +
AcrIE5 ------G ----------T D R D H A E R I Y E E L R A D D R I Y F D D S V G L D R Q G L L I R E D V D L --M
MGV-GENOME-0228707_CDS_0056 Q P K -K G S S I L S G (132)
+
AcrIE5 ---A -V A A E I -E
MGV-GENOME-0228707_CDS_0056 4 AcrVA3 0.39 View Alignment MGV-GENOME-0228707_CDS_0056 M S Q -K F L ---K F T S E S L -----------S A -S ---Y -----------------I ---P F P (60)
M + +
AcrVA3 M V G K S K I D W Q S I D W T K T N A Q I A Q E C G R A Y -N T V C K M R G K L G K S H Q G A K S P R K D K G I S R P Q
MGV-GENOME-0228707_CDS_0056 R F L M -------------E D S ---L -A G -L S N D A K V L Y A L M L -D R A S I S K V N G F L E T D G T I (120)
L + L D
AcrVA3 P H L N R L E Y Q A L A T A K A K A S P K A G R F E -T N T K A K T W --T L K -S ----P ---------D N K T
MGV-GENOME-0228707_CDS_0056 R I Y F T V E Q A Q K K L H R S R Q -C A -T -R I F -H -E L E F -S G L -I C R K K Q G L G K P A L I T L N Y P S N (180)
+ R K S
AcrVA3 Y T F T ----------N L M -H -F V -R T N -P -H L F -D P D D -V V W R T K -S -N G V E -W -C R A S S G
MGV-GENOME-0228707_CDS_0056 A K L I Q P -K ------K -G ---S S I L --S G (208)
+ L+ K G S+ +
AcrVA3 L A L L A K R K K A P L S W -K G W R L I S L T K D N K
MGV-GENOME-0228707_CDS_0056 5 AcrIF24 0.38 View Alignment MGV-GENOME-0228707_CDS_0056 M S Q K F L -K ---F ---T S E S ----L ------------------------------------(60)
M+
AcrIF24 M N -A I H I G P F S I T P A A R G L H Y G G -L P H H Q W T L Y Y G P R E M A I K T L P D S Y T S S E V R D E F S D I
MGV-GENOME-0228707_CDS_0056 ------------S A S -----------Y --------------------------------- (120)
AcrIF24 I A E F V I D A R H R Y A P D V L E L V N S D G D A -V L A R V A V S R L P E A L S G C I P D D R F P Y W L L T A S R P
MGV-GENOME-0228707_CDS_0056 ----------------------I P F P R F L M E D S -L A G -L -S N D A K -V -L -Y A L M L D R A S I (180)
+ + L L + +
AcrIF24 R L G L P V T L N E Y T A L A V E L S A P P L A W I T G L L P G E V L T -H D A E E W -R P -P -T S W E L R H V V --
MGV-GENOME-0228707_CDS_0056 S K V N G F L E T D G T -I -R I Y F T V E Q A Q K K L H R S R Q C A T -R I F -H E L E F S G L I C R -K K Q G L -G (240)
+G + A L A F
AcrIF24 -G -------E G -S -F -T G V S G A A A A A L L G M ---S A -T N -F R -K Y T A -----G D -S ---A A
MGV-GENOME-0228707_CDS_0056 K P -A L I T L -N Y P S N A K L I Q P -K K G S S -I -L S G (272)
+ L+ G
AcrIF24 N -R -Q -K -I S F A A W H Y L L D -R -L G -V K -R -A S
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;