3D Structure for MGV-GENOME-0221136_CDS_0052 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 95.27 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0221136_CDS_0052 1 AcrIE6 0.71 View Alignment MGV-GENOME-0221136_CDS_0052 M T K E E S L R L E K I L K K I D K A D E M N C -N -K -E -E E -Y N -S -F -C T -N -T -R E D W ------N E (60)
M+ + E + I + E
AcrIE6 M N -N D ---T E V L E Q Q I K A F E ----L -L -A -D -E L K -D -R -L P -T -L -E -I -L S P M Y T A V M
MGV-GENOME-0221136_CDS_0052 E Q Y Q K L K R E K A L A E A A Y F A S L I E L K A E -V -K -C -M ---L S K (101)
+Y + + A A L E L
AcrIE6 V T Y D L I G K Q L A S R R A E L I E I L E E Q Y P G H -A -A D L S I K N L C P
MGV-GENOME-0221136_CDS_0052 2 AcrIE1 0.66 View Alignment MGV-GENOME-0221136_CDS_0052 M T ---K E E S L R L E ---K -------I L K -K ----I D K A D E M N C N K E E E Y N S F C T N T R E D W N (60)
M + ++ L + L + + + + N + R
AcrIE1 M E K K L S D A Q V A L V A A W R K Y P D L R E S L E E -A A S I L S L I V F Q A E T L S D Q A N E L A N Y I R R -Q G
MGV-GENOME-0221136_CDS_0052 E E Q Y Q K L K R E K A L A E A A Y F A ---S L I E L K A -E V K C M L ---S -K (103)
E + R + A + + +
AcrIE1 L E E A E G A C R N I D I M R A K W V E V C G E V N Q H G I R V Y G D A I D R D -V D
MGV-GENOME-0221136_CDS_0052 3 AcrIIC4 0.59 View Alignment MGV-GENOME-0221136_CDS_0052 M T -K -E E S L R L E K ---------I L K K I D -K -A D E M N C N K E E E Y N S F C T N T -R E D W N E E Q Y (60)
M + + + K + + E +S E + E
AcrIIC4 M K I T S S N F A T I A T S E N F A K L S V L P K N H R E -P I K G L F K S A V E Q F S S A R D F F K N E N Y S K E L A
MGV-GENOME-0221136_CDS_0052 Q K L K R E K -A L A E A A Y F A S L I E L K A E V K C M -L S -K (94)
K A L + +
AcrIIC4 E K ---F -N K E A V N E A V E K L Q K A I D L A E K -Q G I Q F
MGV-GENOME-0221136_CDS_0052 4 AcrIIA28 0.57 View Alignment MGV-GENOME-0221136_CDS_0052 M -T K E E S L R L E K I L K K -I D K A -D E M N C N K E E E Y N S F C T N T R E D W -N E E Q Y Q K L K R ----E (60)
M T E +L E + + ++ R + + Y+KL + +
AcrIIA28 M K T I F T K K Q T E E L L N D I S I E K Q K E L F N S M H D F R S Q H A K E A R I P G W S -D K Y N K L E K K M L S D
MGV-GENOME-0221136_CDS_0052 K A L A E A A Y F A S L I E -L --K A -E V K C M L S -K (90)
+ + +L L L
AcrIIA28 F E E V T G I K Y D T L E S E L I W D -N L S N K F L Y N S
MGV-GENOME-0221136_CDS_0052 5 AcrIF23 0.56 View Alignment MGV-GENOME-0221136_CDS_0052 M T K --E E S L ---R -L E K -I L K ----K -----I D K ---------------A D E --------(60)
MT + D
AcrIF23 M T N F Q T W L D S A D I P V Q -Q N G Q W I D L -E T G I A Y D P S Y N Y A A N T R R A S L S P R G I D A R A V A K T
MGV-GENOME-0221136_CDS_0052 -----------------M -N C -N -K E E E Y N S --------F C T --------N T R E D W ---- (120)
K N E
AcrIF23 F G G R A L T G T A R Q K E W A E K I R -A -E K V Q Q M N -Q D Q A E M A C D P -S G L L T A A K F W I E --N R N D
MGV-GENOME-0221136_CDS_0052 N E E Q Y Q K L K R E K A L A E -------A A Y F -A -S L I E L K A E V K C M L S ---K (168)
+ ++ AA ++ + AE
AcrIF23 S A Q E I A G F V M Q Q K A L L A Q H R S A K A A G Q A -D K V A K I A A E Y N A L T A R W G F
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;