3D Structure for MGV-GENOME-0220628_CDS_0012 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 89.32 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0220628_CDS_0012 1 AcrIIA27 0.75 View Alignment MGV-GENOME-0220628_CDS_0012 M K K Y I A R F F -R -Y N P Q I -K -G -G G -Y E T E R E I E A K S I T S A K K K A R E I E N N C L Y G S M T L L D (60)
MK + + +EAK+ A KKARE + + D
AcrIIA27 M K T F N I I V S E S A N -L K -E H S -S E L V D N I I Y K V E A K N R R E A F K K A R E E Y S F S S K W K F N M R D
MGV-GENOME-0220628_CDS_0012 I K L A ---D -------E -Q E -G E L (83)
+ ++ +
AcrIIA27 L T A I D N T H R R A W G R R Y L R V E E -A
MGV-GENOME-0220628_CDS_0012 2 AcrIE2 0.67 View Alignment MGV-GENOME-0220628_CDS_0012 M K K Y I A R F F R Y N P Q I -K G -G -G -Y E T E R E -I E -A K -S I T S A K K K A R E I ----E N N C L Y --(60)
M Y++ + N + T + + AK A I +Y
AcrIE2 M N T Y L I D P R K -N -N D N -S G -E -R F -T ---V -D A V -D I T A A A K S A A Q Q I L G E E F E G L V Y R E
MGV-GENOME-0220628_CDS_0012 -G ---S M -T -L L -D I -K L ----A ----D -E Q E -------G -E L (103)
G + + L
AcrIE2 T G E S N G S G -M -F Q A -Y H -H L H G -T N R T -E T T V G Y P F H V M -E -L
MGV-GENOME-0220628_CDS_0012 3 AcrIF9 0.60 View Alignment MGV-GENOME-0220628_CDS_0012 M K -K Y I A R F F R Y N P Q I K G G -G Y E T E R E I E A K S I T S A K K K A R E I E N N C L Y -G S M T -L L D I K (60)
MK YI++ I IEA S+++AK+ A T I
AcrIF9 M K A A Y I I K E -V Q -N -I --N S -E R E G T Q I E A T S L S Q A K R I A S K E Q -C F -H G ---T V -M R I E
MGV-GENOME-0220628_CDS_0012 L A -D E ---Q ----E --G -E L (80)
+
AcrIF9 T V N G L W L A Y K E D G K R W V D C Q
MGV-GENOME-0220628_CDS_0012 4 AcrIC9 0.59 View Alignment MGV-GENOME-0220628_CDS_0012 M -K ---K Y I A R F F R Y N P Q I K G G G Y E T -E R E I E A K S I T S A K K K A R E I E N N C -L Y G -S M T L -(60)
M Y + + + + N
AcrIC9 M E T K M T S F Y K I T A -Y -------N S Q A L Y --F -W G T D A D V D R Y V D -W L N R D R E I -N V Y A -A
MGV-GENOME-0220628_CDS_0012 L D I K L ---A -----D -E Q ----------E -G -E L (94)
I A D E+
AcrIC9 E A I P E A E W A Q Y E G R D D V L S G E E C G W D D F M S -A E A
MGV-GENOME-0220628_CDS_0012 5 AcrIC8 0.56 View Alignment MGV-GENOME-0220628_CDS_0012 M K K Y I A -R F F -R Y N P Q I K G G -G --Y ---E T E R E I E A K S I T S A K K K A R E I E N N C ---L ---(60)
M I RE K+ A ++ ++E
AcrIC8 M Y -A I -R -K I Q F F Y G P T D -K K S Y V G E E A G G R R E -L F K T R A E A Q A R I E D L E E G V Y Y L -A H N
MGV-GENOME-0220628_CDS_0012 --Y G -S M T L L D I K L A D E -Q E G -----E L (88)
++ + E Q
AcrIC8 E S G R P D Y K I V W V --R G E A Q F E H A R W M R G
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;