3D Structure for MGV-GENOME-0218571_CDS_0045 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 87.51 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0218571_CDS_0045 1 AcrIE6 0.71 View Alignment MGV-GENOME-0218571_CDS_0045 M M N I K E T R A E R I N K I P H E I M K L K K Q K Q Y A V K --Q N -W ----H T A A A M I G K K I D E L E K E F K (60)
M N E I + LK + + IGK + E
AcrIE6 M N N D T E V L E Q Q I K A F E L L A D E L K D R L P T L -E I L S P M -Y T A V M V T Y D L I G K Q L A S R R A E L I
MGV-GENOME-0218571_CDS_0045 E -L ---C N S Y -G ---G --E -T (81)
E L
AcrIE6 E I L E E Q Y P G H A A D L S I K N L C P
MGV-GENOME-0218571_CDS_0045 2 AcrIF23 0.61 View Alignment MGV-GENOME-0218571_CDS_0045 M M N I K ---E T --------R -A -------E R I N K ---------------I -----------(60)
M N + +
AcrIF23 M T N F Q T W L D -S A D I P V Q Q -N G Q W I D L E T G I A Y -D P S Y N Y A A N T R R A S L S P R G I D A R A V A K
MGV-GENOME-0218571_CDS_0045 ----------------------------------P -H E I M K L K K Q K Q Y A V K Q N --W H T A A (120)
+ L + + + +
AcrIF23 T F G G R A L T G T A R Q K E W A E K I R A E K V Q Q M N Q D Q A E M A C D P S G L L T A A K F W I E N R N D S A Q E I
MGV-GENOME-0218571_CDS_0045 A M I G K K I D E L E K ---------------E F K E L C N S Y G G -E -T (162)
A L N
AcrIF23 A G F V M Q Q K A L L A Q H R S A K A A G Q A D K V A K I A A E Y N A L T A R W G F
MGV-GENOME-0218571_CDS_0045 3 AcrIIC4 0.58 View Alignment MGV-GENOME-0218571_CDS_0045 M M N I K E T R A -------------------E R I N K I P H E I M -K L K K Q K Q -Y A V -K -----Q N (60)
M + A E I + + + +
AcrIIC4 M K I T S S N F A T I A T S E N F A K L S V L P K N H R E P I K G L F K S A V E -Q F S S A R D -F F K N E N Y S K E L
MGV-GENOME-0218571_CDS_0045 W H T A A A -M I G -K -K I D -E L E K E F K E L C N S Y G G E T (94)
+ + +L G
AcrIIC4 A E K F N K E -A V N -E -A V E -K L Q K A I D L A E K Q G I Q F
MGV-GENOME-0218571_CDS_0045 4 AcrIE1 0.54 View Alignment MGV-GENOME-0218571_CDS_0045 M M N ---I -K E T R A --------------E -R -I -N -K -I ----P ---H -E I M -K L K K Q -K Q (60)
M + +
AcrIE1 M E K K L S D A Q V A L V A A W R K Y P D L R E S L E -E -A -A -S -I -L S L I V F Q A E T -L S D -Q A N E L -A
MGV-GENOME-0218571_CDS_0045 -Y A V K Q N W H T A A A ---M I G K -K -I -D -E -L -E -K -E -F -K -E ----L C N S Y -G ---G -E - (120)
Y ++ + A G +
AcrIE1 N Y -I R R Q G L E E A E G A C R N I D I -M -R -A -K -W -V -E -V -C -G -E V N Q H G I R V Y G D A I D R D V
MGV-GENOME-0218571_CDS_0045 T (121)
AcrIE1 D
MGV-GENOME-0218571_CDS_0045 5 AcrIIA28 0.52 View Alignment MGV-GENOME-0218571_CDS_0045 M M N -I -K E T R A E R I N K ----I ----P H E I M K L K K -Q K -Q Y A V K Q N W H ----T A A A M I G K K (60)
M + K + E +N + + A W +
AcrIIA28 M K T I F T K K Q T E E L L N D I S I E K Q K E L F N S M H D F R S Q -H A K E A R I P G W S D K Y N K L E K K M L S D
MGV-GENOME-0218571_CDS_0045 I D E L E K E -F K E -L -----C N S Y G -G ---E T (90)
+E+ L + +
AcrIIA28 F E E V T G I K Y D -T L E S E L I W D N L S N K F L Y N S
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;