3D Structure for MGV-GENOME-0185923_CDS_0009 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 87.22 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0185923_CDS_0009 1 AcrIE1 0.70 View Alignment MGV-GENOME-0185923_CDS_0009 M S E R E A I K S L K E F A Y T I H G T L S A E E A K I V L N L I E K L Q K A N K E L D N D N T E W R A -K Y -V -I -(60)
M E+ + + + + K +
AcrIE1 M -E K K L S -D ---A Q V A L ------------V A A W R K Y P D L R E -------S L E -E A -A -S -I
MGV-GENOME-0185923_CDS_0009 Q -L -A -K I D D L -Q -K -E N K N I T Q Q R D Y Y K A R Y N E L S K I V D L M A K Y I Y I L G D Y A C L -Y -E E (120)
+ + +++ Y + ++ + I I E
AcrIE1 -L -S -L I V F Q -A -E -T L S D Q A N E L A N Y I R R Q G ---L E E A E G A C R N I D I M R A ---K W -V -E
MGV-GENOME-0185923_CDS_0009 C D D N M D -R E C E D C I K -E -Y F Y K K V K E T K D N E N T K N -L (157)
D
AcrIE1 V C G E V N Q -H ----G I R -V -Y G D ----A I D -R -D --V D
MGV-GENOME-0185923_CDS_0009 2 AcrIIA11 0.57 View Alignment MGV-GENOME-0185923_CDS_0009 M S E R E A I K S L K E -F A Y T I ---------H -G T ------L -S A E E A K I V L N L I E K L Q K A N -K (60)
M + +++ E A ++ + L ++
AcrIIA11 M A D M -T L R Q F C E R Y R K G D F L A K D R E T Q I E A -G W Y D W F C D D K A L A G R L A K I W G I L K G I T S D
MGV-GENOME-0185923_CDS_0009 E L D N D N T E W -R A K Y V I Q L A K I D D L Q K E N K -N -I T -Q Q R D ----------Y ----Y K ----(120)
+ W + D + QRD
AcrIIA11 Y I L D N Y R V W F K N N C P M V G P L Y D -D V R F E -P -L -D E E Q R D E L Y F G V A I D D K R R E K K -Y V I F
MGV-GENOME-0185923_CDS_0009 -A --------R -Y -N -E -L S K I V D L -M A K Y I Y I L G D Y A C L Y E E C D D N ---M D R E C E D -C - (180)
+ V L Y + E
AcrIIA11 T -A R N D Y E N E C G -F -N -N -V R E V R Q F I N G W E D E L K N -E E F Y K -A R E K K R Q E M E E A N -N -K
MGV-GENOME-0185923_CDS_0009 I K E Y F Y K K V K E T K D N E N T K N L (201)
++ E N K
AcrIIA11 -F A E I M Q R A D E I L W --N L K E D
MGV-GENOME-0185923_CDS_0009 3 AcrIC3 0.56 View Alignment MGV-GENOME-0185923_CDS_0009 M S E R E A I K S L K E F A Y T I -H G T L S A E E A K I V L N L -I E K L Q K ---A N K E L D N D N T E -W R A --(60)
MS + + T+ + + K +
AcrIC3 M S -I Q V T S T N G -R --T V N L -E --I ----E ----L -G S V V A S S G Q V K F M A D K T D R G -L E S R
MGV-GENOME-0185923_CDS_0009 K Y V I Q L A K I D D L -Q K E N -K N I T Q Q R D Y Y K A R Y N E L S K I V D L -M A K Y -I Y I -L G D Y A C L Y E (120)
L+ E ++ + A E
AcrIC3 F ----L V -----P --E -A -------G N R R I E V A L T G ---R -D L E -A A N A -L F S E L A A S V E
MGV-GENOME-0185923_CDS_0009 E C D D N M D R E C E D C I K E -Y F Y -K -K V K E T K D -N E N T K N L (158)
+ +
AcrIC3 A T N E --------M Y R -E L -D A -E -R A Q I N K A ---L E -G
MGV-GENOME-0185923_CDS_0009 4 AcrIE6 0.56 View Alignment MGV-GENOME-0185923_CDS_0009 M S E R E A I K S L K E F A Y T I H G T L S A E -E A K I V L N L I E K L Q K A N K E L -D -N -D -N -T -E -W -R (60)
M+ L +
AcrIE6 M N --N D T E V L E ----Q --------Q -------------------I -K -A -F -E -L -L -A -
MGV-GENOME-0185923_CDS_0009 -A -K Y -V -I Q L A -K I D D L Q K E N K N I T Q Q R D Y Y K A R Y N E L S K I V D L M -A K Y I -Y I L G D Y A C (120)
L Y+ + DL K +
AcrIE6 D -E L -K -D R L P -T ----L E I L -----------S P M Y T A V M V T Y D L I G -K Q L A -------S
MGV-GENOME-0185923_CDS_0009 L Y E E C D D N M -D -R E C E D C I K E -Y F Y K -K -V K E T K D -N E N T K N -L (164)
E + + E +
AcrIE6 -------R -R -A -E L I E I L E E Q -Y P G H -A -A D L S -I -K --N L C P
MGV-GENOME-0185923_CDS_0009 5 AcrIB9 0.56 View Alignment MGV-GENOME-0185923_CDS_0009 M S E R E A I K S L K E F A Y T I H G -T L S A E E A K I V L N L I E K L -Q K A N K E L D -N ----------D N (60)
M+ A + + + ++
AcrIB9 M N K F -A F E N ----D K Y L E -R -N I K A V V E K I A R D F N L H L K S K Y S K D -C E F T V V A D N S F D N I
MGV-GENOME-0185923_CDS_0009 T E W R A -----------------------------------------K Y -V -I Q -------(120)
AcrIB9 E N -S T I F L E I K R N D G K A C Q D H H I Y A E Y E C D E D D N E Y I A L T V K F Y G S S -A -S N -Q I N T V Q G
MGV-GENOME-0185923_CDS_0009 L ---A K I D D L Q K E N -K N I T Q Q R D Y Y K -A R Y N E L S K I V D L M A K Y I Y I L -G D Y A C L --Y E E C (180)
+ + + ++ +++ + + E + +
AcrIB9 I K S S K Y A S C I V S D T D N Q L S K S I H E L N L K K E K E Q Q E A W N K K E A E Y A R K K -Q A --Y V S -Q S Q
MGV-GENOME-0185923_CDS_0009 D D N -M D R E -C E D -C -I K E Y F Y K K V K E T K D N E N T K N L (216)
+ + + FY + + +
AcrIB9 R E -K Y E -D I -F -D -L -P F D F Y D Y I D ----K K E Q G L I
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;