3D Structure for MGV-GENOME-0143122_CDS_0002 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 89.32 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0143122_CDS_0002 1 AcrVIA2 0.72 View Alignment MGV-GENOME-0143122_CDS_0002 M K L K C K K C G N E E Y F Y E K A R F A G D H H I I -I N S D G T Y N L D G M N -F D A Y N Y L Y S -E S I D N Y Y Y (60)
M CKKCG + + ++ DG +
AcrVIA2 M W K -C K K C G C D R F Y Q D I T G G --I S E V L E M D K D G -E V -----L ----D E I D -D -V E Y G D F S
MGV-GENOME-0143122_CDS_0002 C N K C N S I V C E K T ---K ----L ---------K K (92)
C KC + + K
AcrVIA2 C A K C D N S S S K I Q E I A Y W D E I N G K N K T Y L S K D K
MGV-GENOME-0143122_CDS_0002 2 AcrIF18 0.47 View Alignment MGV-GENOME-0143122_CDS_0002 M K L -K C K K C G N E E Y F Y E K -A R F -A G D H H I I I N S D G T Y N L D G M N F D A Y N -Y -L -Y S E S -I D (60)
M K + + G N
AcrIF18 M T T I K A A Y I S K D ------Q -N W N D G T T T Y W F D V ---------N ----G E -T -F G V V H G -G
MGV-GENOME-0143122_CDS_0002 -N --Y Y Y C N K C N -S -I -V ----C ----E K -T K L K K (95)
+ +
AcrIF18 E S W N A K V V D C D -G -A -P S D Q Y T V D Q F N I T E D M I A E
MGV-GENOME-0143122_CDS_0002 3 AcrIIA12 0.42 View Alignment MGV-GENOME-0143122_CDS_0002 M K -L -K ---C K K C -G ----------N -----E E Y F Y -E K --A R F -A G -D H H -I I -I N S D G (60)
M + G
AcrIIA12 M S K T M Y K N D V I E L I K N A K T N N E E L L F T S V E R N T -R E A A T Q Y F --R C -P -E -K H -V -S D A G
MGV-GENOME-0143122_CDS_0002 T Y N L D G M N F D A Y N Y L Y S E S I D N Y Y Y C N K C N S I V C E K T -K ---L K K (105)
Y D ++ ++ L
AcrIIA12 V Y Y G -E -D ---------F E F D G F E I F -E -D D L I Y T R S Y D K E E L -N
MGV-GENOME-0143122_CDS_0002 4 AcrVIB1 0.42 View Alignment MGV-GENOME-0143122_CDS_0002 M -K L K C K K C ---G ---------------------N -E ----------E --Y F -Y ------(60)
M L K + Y
AcrVIB1 M K D L D L S K L K G E E I A Q W L L N N K K A T A I Q L S S E R T D T D D G F M H I L V H K -D E Y V E I I Y S Y L K
MGV-GENOME-0143122_CDS_0002 -E -K -A R F A G D H H I I I N S D G T Y N L D G M N F D A Y N Y ---L -Y S E S -I -D -N -Y Y Y C N K -C -N (120)
I + +
AcrVIB1 I -D -E D D V M Q N F T I -Y S K --R -W ---------G N I D N S Y F E L Q T -F -E -G E I F T G -E -S -
MGV-GENOME-0143122_CDS_0002 -S -I -V C E K ---T K ---L -K K (141)
+C K
AcrVIB1 D -K -I L C G V L S L G D L T T -L -K
MGV-GENOME-0143122_CDS_0002 5 AcrIIA26 0.42 View Alignment MGV-GENOME-0143122_CDS_0002 M K -L K C K K -C --G -----------------------------------------------(60)
MK L
AcrIIA26 M K K L Y I Q T N Q F A N G E L Q V E N T S Y E L C D T F K E L Y S V A S N L V D E N T L N F V E D N F I E Q N Y K D E
MGV-GENOME-0143122_CDS_0002 ------------------------------------------------------------ (120)
AcrIIA26 Y N G V Y E N D G D T G E F V G Q V F E N K V T E E Q F K E L L E Q L E I T Y T E F D P E E E L A K C I A N K N R K S E
MGV-GENOME-0143122_CDS_0002 N -----------E --E Y F Y E -K A R F A G D H H I I I N S D G -T Y N L D G M N F D A Y N Y L Y S E S I D N (180)
E + + + + + ++
AcrIIA26 F Y G N G L K V I A E Y L E S -I S H E D A L A V V T Y Y Y F Y F -G --F -G Y E ----D Q L I S D I K D D Q ---
MGV-GENOME-0143122_CDS_0002 Y Y Y C N K C N S I V C -E K T -K L K -K (202)
+
AcrIIA26 -----E D G V K F E H --V E R S E T I
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;