3D Structure for MGV-GENOME-0129257_CDS_0018 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 86.17 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0129257_CDS_0018 1 AcrIE1 0.73 View Alignment MGV-GENOME-0129257_CDS_0018 M E I K D F K E -H V L -K -T L L -E Y K Q L N K E L Q T V R E T Y I T A L S D F F K D D N -V L F C T D K E E F T K (60)
M K L+ + +L E +++LS E
AcrIE1 M -E K K L -S D A Q -V -A -L V A A W R K -Y P D L R E S L E E A A S I L S L I V F Q A -E -T L S D Q A N E L A N
MGV-GENOME-0129257_CDS_0018 E F L N G E I S N K T N S L L V H S A L I N E V E N N V K R K Y S E L V E A F -N -M L D K L W E R K E N (113)
+ + I E+ + +R
AcrIE1 Y I R R Q G L ----E E A E G A C R N I D I M R A K W V E V C G E V N Q H G I -R V Y G D A I D R D V D
MGV-GENOME-0129257_CDS_0018 2 AcrIE6 0.71 View Alignment MGV-GENOME-0129257_CDS_0018 M E I K D F K E H V L K T L L E Y K Q L N K E L Q T -V R E -T Y I -T A L S -D F F K -D D N V L F C T D K E E F T K (60)
M E + + + L +L
AcrIE6 M N --N D T E V L ---E Q Q -------I K -A F E -L L -A D -E L K D R L P -T L -E I L ----------
MGV-GENOME-0129257_CDS_0018 E F L N G E I S N K T N S L L V H S A L I -N E V E N N V K R K Y S -E L V E -A F N -M L D K --L W E R K E -N (118)
+ + + + + +
AcrIE6 S ---P M Y T A V M V T Y D L I G K Q L A -S R R A E L I E I L E E Q -Y P G H A -A ----D L -S I K N L C P
MGV-GENOME-0129257_CDS_0018 3 AcrIIC4 0.61 View Alignment MGV-GENOME-0129257_CDS_0018 M E I -K D F K E H V L K T L L -E -Y K Q L N K E L Q T V R E T Y I T A L S -D F -F K D D N V L F C T D K E E F T K (60)
M I ++ L+ + + + K F + ++ F
AcrIIC4 M K I T S S N F A T I A T --S E -N ----F A K L S V L P K N H R E P I K G -L F -K S A V E Q F S S A R D F F K N
MGV-GENOME-0129257_CDS_0018 -E F -L N -G E I S N K T N S L L V H S A L I N E -V -E N N V K R K Y S E L V E A F N M L D K L W E R K E -N (117)
+ + V L A ++K
AcrIIC4 E N -Y -S K E L A E K --------------F -N K E A V N E A V E K L Q K A I D L A E K Q G -I --Q F
MGV-GENOME-0129257_CDS_0018 4 AcrIC3 0.60 View Alignment MGV-GENOME-0129257_CDS_0018 M E I K D F K E H V L K T L L E Y K Q L N K E L Q T -V R E T Y I T A -L S D F F K D -D N V -L F C T --D K E -E F (60)
M +T+ + +V +
AcrIC3 M S -I Q V T S T N G R T V ------------N L E I E ----L -G S V V A S S G Q V K F -M A D K T -D R G L
MGV-GENOME-0129257_CDS_0018 T K E F L N -G E I S -N -----K -T -N -S L L V -H S A L I N E V E N N V K R K Y S E L V E -A F N -M -L -D (120)
FL E+ L +AL +E+ +V +
AcrIC3 E S R F L V P -E A G N R R I E V A L T -G -R D L E -A A N A L F S E L A A S V E A T N E M Y R -E L D -A -E -R -
MGV-GENOME-0129257_CDS_0018 -K -L -W E R K E N (131)
E
AcrIC3 A -Q -I N K A L E G
MGV-GENOME-0129257_CDS_0018 5 AcrIF23 0.57 View Alignment MGV-GENOME-0129257_CDS_0018 M -E I K D F K -E ----------H V L K ----------------------------------T L (60)
M + + T
AcrIF23 M T N F Q T W L D S A D I P V Q Q N G Q W I D -L E T G I A Y D P S Y N Y A A N T R R A S L S P R G I D A R A V A K T F
MGV-GENOME-0129257_CDS_0018 L -E Y K --Q -L N K E L Q T V R E T Y I T A L S D F F K -D D N V -L F C T D K E E F T K E F L N G E I S N K T N S (120)
+ + E D + D + I N++ S
AcrIF23 -G G R -A L T G -T A R Q K E W A E K I R A E K V Q Q M N Q D Q -A E M -A C D P S G L L -T A A K F W I E N R N D S
MGV-GENOME-0129257_CDS_0018 L L V H S -A L I N E V E N N V K R K Y S E L V -E -----A F N M L D K L W E R -K ---E N (169)
+ + + +
AcrIF23 A -Q E I A G -F V M Q Q K A L L A Q H R S A K A -A G Q A D K V A K I A A E Y N A L T A R W G F
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;