3D Structure for MGV-GENOME-0124394_CDS_0004 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 93.89 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0124394_CDS_0004 1 AcrIE6 0.70 View Alignment MGV-GENOME-0124394_CDS_0004 M D N E L R E L L T D -T D E -I H L Q L H C T I E S V R -Q -C W I A L T Q G D N E P C E D D Y D A L F G V Y -R R L (60)
M N+ L + ++ ++ L Y A+ Y
AcrIE6 M N N D T E V L E Q -Q I K -A F E ----L L A D E L K D -R -L P T L -E I L ----S P M Y T A V M V T Y D ---
MGV-GENOME-0124394_CDS_0004 S Q L D K E L R D N K D G L W K A G L R L -S K ---N -A E S E V D A (96)
+ K L + L + +
AcrIE6 -L I G K Q L A S R R A E L I E I L E E Q Y P G H A A D L S I K N L C P
MGV-GENOME-0124394_CDS_0004 2 AcrIE1 0.69 View Alignment MGV-GENOME-0124394_CDS_0004 M D ---N E L R E -L L ---T ----D -------T D E I H L Q L H C T I E S V R Q C W I A L T Q G -D N E P C (60)
M+ +++ L+ D I + ++E++ L +
AcrIE1 M E K K L S D A Q V A L V A A W -R K Y P D L R E S L E E A A S I L S L I V F Q A E T L S D Q A N E L A N Y I R R Q --
MGV-GENOME-0124394_CDS_0004 E D D Y D A L F G V Y R R L S Q L D K E L R D N K D G L W K A G L R L S K N A E -S E V D A (106)
+ + G+ R + + + G+R+ A
AcrIE1 --G L E E A E G A C R N I D I M R A K W V E V C G E V N Q H G I R V Y G D A I D -R D V D
MGV-GENOME-0124394_CDS_0004 3 AcrIIC4 0.59 View Alignment MGV-GENOME-0124394_CDS_0004 M D --N -E L R E L ---------L ----T D T D -E -I H L Q L H C T I E S V R Q C W I A L T Q G D N E P C E (60)
M + + I+ + +E+ + + +N E
AcrIIC4 M K I T S S N F A T I A T S E N F A K L -S V L P K N H R E -P I K G L F K S A V E Q F S S A R D F F K N -E N Y S K E
MGV-GENOME-0124394_CDS_0004 D D Y D A L F -G V Y R R L S Q L D K E L R D N K D G L W K A G L R L S K N A -E -S E -V -D A (109)
+ + + L KA A +
AcrIIC4 L A E K F N K E -----------A V N E A V E K L Q K A I D L ----A E -K -Q G I Q -F
MGV-GENOME-0124394_CDS_0004 4 AcrVA1 0.56 View Alignment MGV-GENOME-0124394_CDS_0004 M D ----N E -----------L -R E -L L T D ----T D E I -H L -Q -L -----------H C T I E S (60)
M L + +
AcrVA1 M Y E A K E R -Y A K K K M Q E N T K -I D -T L T D E Q H D A L A Q -L C -A -F -R H K F H S N K D S L F L S E S A
MGV-GENOME-0124394_CDS_0004 V R Q C W I A L -T Q G ------------------------D -------N E --------------(120)
+ ++ D N
AcrVA1 F S G E F S F E M Q S D E N S K L R E V G L P T I E W S F Y D N S H I P D D S F R E W F N F A N Y S E L S E T I Q E Q G
MGV-GENOME-0124394_CDS_0004 -P -C E D D Y D A L F G V Y R R L -S Q L D K E L R D N K D G L W K A G L R L S ---K -N -A E ----S E V D A (179)
DD + VY L + + E + + K R+ + +
AcrVA1 L E L D L D D D E T Y E L V Y D E L Y T E A M G E Y E E L N Q D I E K Y L R R I D E E H G T Q Y C -P T G F A R L -R
MGV-GENOME-0124394_CDS_0004 5 AcrIC3 0.56 View Alignment MGV-GENOME-0124394_CDS_0004 M D N E L -R E L ---L T ----D ---T D E I H L Q L H C T I E ----S V R -Q -C W I A L T Q G D -N E P C E (60)
M + + + Q++ ++ + ++
AcrIC3 M S I Q V T S T N G R T V -N L E I E L G S V V A S S G Q V K F M A D K T D R G L -E -S R -F L V P E A G N R R I E V
MGV-GENOME-0124394_CDS_0004 -D D Y D A L F G V Y R R L S Q L D K E L R D N K D G L W K -A G L R L S K N A E S E V D A (106)
L + S L + + + + ++ ++
AcrIC3 A L T G R D L E A A N A L F S E L A A S V E A T N E M -Y R E -L D A E R A Q I N K A L E G
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;