3D Structure for MGV-GENOME-0104754_CDS_0002 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 89.74 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0104754_CDS_0002 1 AcrIIA21 0.87 View Alignment MGV-GENOME-0104754_CDS_0002 M S Q K F L K F T S E S L S A S Y I P F P R F L M E D -S L A G L S N D A K V L Y A L M L D R A S I S K V N G F L E T D (60)
M P+ L D LS ++YA+ DR G+++TD
AcrIIA21 M D -Y --D -------N E N Y L I P K I L L Q D D F Y S S L S A K D I L V Y A V L K D R Q I E A L E K G W I D T D
MGV-GENOME-0104754_CDS_0002 G T I R I Y F T V E Q A Q T K L H R S R Q S A T R I F R E L E Y S G L I V R R K Q G L G K P A L I T L N -Y P A D A K L (120)
G+I + F + + SR++ + LE LI R + + P
AcrIIA21 G S I Y L N F K L I E L A K M F S C S R T T M I D V M Q R L E E V N L I E R E R V -D -V F Y G -Y -S L -P Y -K T Y
MGV-GENOME-0104754_CDS_0002 I Q P K E D -G A I S H E (133)
AcrIIA21 --I ---N ---E -V
MGV-GENOME-0104754_CDS_0002 2 AcrIA3 0.49 View Alignment MGV-GENOME-0104754_CDS_0002 M S Q K F L K F T S E S L S A S Y I P F P R F L -M -E D S L A G L S N D A K V L Y A L M L D R A S I S K V N G F L E -(60)
MS + L + K L + A +
AcrIA3 M S F Y I -M --Y I K ----V K E ---M -S -E -Q K Q I S L R S K Q K E L L Q R F F E I A E V D -------E
MGV-GENOME-0104754_CDS_0002 T D G T I R I -Y -F T V E Q A Q T K L -H R ---S R -Q S A T R I F R E L E Y -S -G L I V R R K Q G L G K P A L I (120)
G + I + ++ RI R + + I +K +
AcrIA3 -N G D L C I P L Y D S S G D L T L -F K Q D S R K Y Q M Y A Y F R I L R L I K -K Q I F F I K V K K V -K R D K K F L
MGV-GENOME-0104754_CDS_0002 T L N Y P A D A K L I Q P K E -D -G A I S H E (144)
+ + +
AcrIA3 C M H S N V I D -Q V K ---S -V -L -E -S
MGV-GENOME-0104754_CDS_0002 3 AcrIE5 0.39 View Alignment MGV-GENOME-0104754_CDS_0002 M S Q K F L K F T S E S L S A S Y I P F P R F L M E D S -L A G L S N D A K V L Y A L M L D R A S I S K V N G F L E T D (60)
MS + +
AcrIE5 M S ------------N D R N G I I N Q I I D -Y T -------------------------------
MGV-GENOME-0104754_CDS_0002 G T I R I Y F T V E Q A Q T K L H R S R Q S A T R I F R E L E Y S G L I V R R K Q G L G K P A L I T L N Y P A D A K L I (120)
R A RI EL I + + + +D+
AcrIE5 ------G ----------T D R D H A E R I Y E E L R A D D R I Y F D D S V G L D R Q G L L I R E D V D L M --
MGV-GENOME-0104754_CDS_0002 Q P K E D G A I S H E (131)
I E
AcrIE5 A V A --A E I --E
MGV-GENOME-0104754_CDS_0002 4 AcrIF24 0.38 View Alignment MGV-GENOME-0104754_CDS_0002 M S Q K F L K ----F ---T S -E S ----L -----------------------------------(60)
M+
AcrIF24 M N -A I H I G P F S I T P A A -R G L H Y G G -L P H H Q W T L Y Y G P R E M A I K T L P D S Y T S S E V R D E F S D
MGV-GENOME-0104754_CDS_0002 -------------S A S ------------Y ------------------------------- (120)
AcrIF24 I I A E F V I D A R H R Y A P D V L E L V N S D G D A V -L A R V A V S R L P E A L S G C I P D D R F P Y W L L T A S R
MGV-GENOME-0104754_CDS_0002 -----------------------I P F P R F L M E D S -L A G -L -S N D A K -V -L -Y A L M L D R A S (180)
+ + L L + +
AcrIF24 P R L G L P V T L N E Y T A L A V E L S A P P L A W I T G L L P G E V L T -H D A E E W -R P -P -T S W E L R H V V -
MGV-GENOME-0104754_CDS_0002 I S K V N G F L E T D G T -I -R I Y F T V E Q A Q T K L H R S R Q S A T -R I F -R -E L E Y S G L I V R -R K Q G L (240)
+G + A L SA
AcrIF24 --G -------E G -S -F -T G V S G A A A A A L L G M ---S A -T N F -R -K -Y T A -----G D -S ---
MGV-GENOME-0104754_CDS_0002 -G K P -A L I T L -N Y -P A D A K L I Q P K E D G A I S H E (272)
A L+ G+
AcrIF24 A A N -R -Q -K -I -S F A A W H Y L L D R -L -G V K R A S
MGV-GENOME-0104754_CDS_0002 5 AcrIF17 0.37 View Alignment MGV-GENOME-0104754_CDS_0002 M S Q K F L K F T S E S L S A S Y I P F P R F -L M E D S L A G L S N D A -K -V -L -Y A L M L D R A S I S K -V -N (60)
M + LA L A + +
AcrIF17 M F -S E -I K --------F S S ----L -S D H A L A E L I K M A M -E -E -F Q Q R L I K P G V N T I K -T -
MGV-GENOME-0104754_CDS_0002 G F L E -T -D -G T I R -I Y F T V E Q A Q T K L H R S R Q S A T R I F R E L E -Y -S G L I V R R K --Q G L ---(120)
+ ++ + ++
AcrIF17 ----V -D -V E P V V L -H A -------P S D N E M V F I N N C L K K R -R -A G -E Y I H A S M K D K -Y R D
MGV-GENOME-0104754_CDS_0002 --G -K P A L I T L --N Y P A D A K L ----I Q P K -E D -G A I S H E (159)
P ++ E
AcrIF17 L T R K Y P Q W F S V K A Y P D D L R G S V S K H Y V D Y F --T -K -K -E
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;