3D Structure for MGV-GENOME-0098727_CDS_0002 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 92.75 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0098727_CDS_0002 1 AcrIIA27 0.75 View Alignment MGV-GENOME-0098727_CDS_0002 M K K Y V V E F T S -A -E N S -F V A D F N D D W Y R E I V E A D S I V E A V D C V K D T L D K E G I --G T E G F L (60)
MK + + A + D VEA + EA +++ + L
AcrIIA27 M K T F N I I V S E S A N L K -E H S S E L V -D N I I Y K V E A K N R R E A F K K A R E E Y S F S S K W K F N M R D L
MGV-GENOME-0098727_CDS_0002 F R V -D D E E I A E L T G V R E W V Y --I N (84)
+ D + G R +
AcrIIA27 T -A I -D N T H R R A W G -R R Y L R V E E A
MGV-GENOME-0098727_CDS_0002 2 AcrIE2 0.69 View Alignment MGV-GENOME-0098727_CDS_0002 M K K Y V V E F T S A E N S F V A D F N D D -W Y R E I -V E A D S I V E A V D C V K D T L D K E -G -I -G T E G F L (60)
M Y+++ N+ + +A + ++ +K + EG +
AcrIE2 M N T Y L I D P -R K -N N D N --S G E R F ---T -V -D A --V -D I T A A A K S A A Q Q I L -G -E E F E G L V
MGV-GENOME-0098727_CDS_0002 F R V D D -E ---E -I A E L ---T ----G ----V -R -E W V Y --I N (101)
R +
AcrIE2 Y R E T G E S N G S G M F Q A Y H H L H G T N R T E T T V G Y -P -F H V M E -L
MGV-GENOME-0098727_CDS_0002 3 AcrIC9 0.63 View Alignment MGV-GENOME-0098727_CDS_0002 M -K ---K Y V V E F T S A E N S F V A D -F N D D W Y R E I V E A D S I V E A V D C V K D T L D K E G I G T E G F L (60)
M + +++ V D L ++ + +
AcrIC9 M E T K M T S F Y K I T A ---------Y --N S Q A L Y -F -W G T D A D V D R Y V -D W L N R D R E I N V Y A A
MGV-GENOME-0098727_CDS_0002 F R V D -D E E I A E L T G V ----------R -E W V -Y I -N (95)
+ + E A G ++ +
AcrIC9 E -A I P E A E W A Q Y E G R D D V L S G E E C G W D D F -M S A E A
MGV-GENOME-0098727_CDS_0002 4 AcrIIA20 0.61 View Alignment MGV-GENOME-0098727_CDS_0002 M K K Y V V E F T S A E N S F V A D F N D D W Y R E I V E A D S I V E A V D C V K D T L D K E G I G T -E G -F L F R V (60)
MK Y V +++I AVD K+ G ++
AcrIIA20 M K N Y E V T N -E ---------V -K N L --N T Q V E T I G Q A V D L Y K E -Y -----G -S -N T I V W -S
MGV-GENOME-0098727_CDS_0002 ---D -D E ---E ----I -A E -L -T -G -V R E W V Y I N (94)
++ E A I
AcrIIA20 I D K -N E D L I D E V T E L -V A -E -Y -A -E K -G T -V I K
MGV-GENOME-0098727_CDS_0002 5 AcrIIA33 0.58 View Alignment MGV-GENOME-0098727_CDS_0002 M K K Y V V E F T S A E N S F V A D F N D D W Y R E I V E ----A D ------------------S I V E -A V (60)
M K ++ + ++ + Y ++E V
AcrIIA33 M I K W T G K -S T -D K G W I R T V E A E T Y Y K L L E T L V D K G Y I G D Y I D S D S Q L F H E L A Y V -S P A -V
MGV-GENOME-0098727_CDS_0002 D C V K D T L D K E ----------G -I G T E G -F L F R V D D E E I A E L -T G V -----R E W V Y -I N (118)
+ D L E ++ D + G I
AcrIIA33 A D L E D R L N D E H Q V E Q A L E D L -E N F D W N R V F E K L T D Q Q F Q T A I A G C T S Q A Y Y Q E F E V I E
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;