3D Structure for MGV-GENOME-0063344_CDS_0002 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 94.09 ;
Download
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0063344_CDS_0002 1 AcrIE6 0.75 View Alignment MGV-GENOME-0063344_CDS_0002 M T K ---H -E I E T E L K E L N N R L D K A E I Y F R N L D H T E V D E -T ----K E Y -K A L -Q K -I I K R M (60)
M +E+ +K +D + +L+ Y + ++ R
AcrIE6 M -N N D T -E V L E Q Q I K A F E L L A D E L K D R L P T L E I L S P M -Y -T A V M V T Y D L -I G K -Q L A S R R
MGV-GENOME-0063344_CDS_0002 A Y L Q G L L -----N E M -E -V ---Q -N -A (87)
A L +
AcrIE6 A E L I E I -L E E Q Y P G -H A A D L S I K N L C P
MGV-GENOME-0063344_CDS_0002 2 AcrIIC4 0.61 View Alignment MGV-GENOME-0063344_CDS_0002 M -T K -H E I E T ------------E -------L ----K -E L N N R L D K A E I Y F R N L D H T -E V D (60)
M T + + A F+N + E+
AcrIIC4 M K I T S S N F A T I A T S E N F A K L S V L P K N H R E P I K G L F -K S A V E Q F S S A R D F F K N E N Y S K E L A
MGV-GENOME-0063344_CDS_0002 E T K E Y K A L Q K I I K R M A Y L Q G L L N E M E -V -Q -N A (93)
E A++ ++ + + L+
AcrIIC4 E K F N K E A V N E A V E K L Q K A I D L A E K Q -G -I -Q -F
MGV-GENOME-0063344_CDS_0002 3 AcrIE1 0.58 View Alignment MGV-GENOME-0063344_CDS_0002 M -T -----K -H -E -I -E -T -------E ----L ----------K -E L N N -R L D -K A E I Y F R (60)
M L L
AcrIE1 M E K K L S D A -Q -V -A -L -V A A W R K Y P D -L R E S L E E A A S I L S L I V F -Q A E T -L S D -Q A N E L A
MGV-GENOME-0063344_CDS_0002 N -L D H T E V -D E T K E Y K A L Q K I I K R M A Y L Q G L L ----N E M -E -V ---Q -N -A (111)
N + ++ + + + + + + + G +
AcrIE1 N Y I R R Q G L E E A E G A C R N I D I M R A K W V E V C G E V N Q H G I R -V Y G D A I D -R D V D
MGV-GENOME-0063344_CDS_0002 4 AcrIF23 0.57 View Alignment MGV-GENOME-0063344_CDS_0002 M -T K H E -I E --T ----------------E L ------------------------------(60)
M + ++
AcrIF23 M T N F Q T W L D S A D I P V Q Q N G Q W I D L E T G I A Y D P S Y N Y A A N T R R A S L S P R G I D A R A V A K T F G
MGV-GENOME-0063344_CDS_0002 ---------------------K -E L N N R L D -K -A E I Y F R N L D H T -E ----V ----D E --- (120)
N+ L T + D
AcrIF23 G R A L T G T A R Q K E W A E K I R A E K V Q Q M N Q D Q -A -E M A C D P S G L -L T A -A K F W I E N R N D S A Q E
MGV-GENOME-0063344_CDS_0002 -T K E Y K A L Q K I I K R M A Y L Q -G -L L --------N E M E V -Q N ----A (165)
++ + +
AcrIF23 I A G F V M Q Q K A L L A Q H R S A -K A A G -Q A D K V A K I A A E Y N A L T A R W G F
MGV-GENOME-0063344_CDS_0002 5 AcrIIA28 0.54 View Alignment MGV-GENOME-0063344_CDS_0002 M T -K ---H -E I E ---T -E -L -------K -E -L N N R L D K A E I Y F -R N L D H -T E V D E T K E Y K (60)
M E + + ++ E K
AcrIIA28 M K T I F T K -K Q T E E L L N D -I S I E K Q K E L F N -S M H D F R S Q H A K E -A -R I P G W S D K Y N K L E K K
MGV-GENOME-0063344_CDS_0002 A L Q K I I K R M A Y L Q G L L ------N E -M -E V Q ---N -A (96)
L+ L
AcrIIA28 M L S D F E E V T G I K Y D T L E S E L I W D -N -L S N K F L Y -N S
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;