3D Structure for MGV-GENOME-0034029_CDS_0019 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 91.04 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0034029_CDS_0019 1 AcrIE6 0.59 View Alignment MGV-GENOME-0034029_CDS_0019 M L P I N E ---Q E I L V D N L Q E V E T I L F N L S E Q L G S R D E ----L -G K -A -W -Y -I V Y K R L Q K -(60)
M N+ E + + L +L ++ K
AcrIE6 M N --N D T E V L E Q Q I K A F E L L A D E L K D R L P T L E I L S P M Y T A -V M -V -T -Y -D L I G K Q -L A S
MGV-GENOME-0034029_CDS_0019 ---E -K -A K E A I M K ----G -----E I Y N K -K -R (93)
E++ ++ K
AcrIE6 R R A -E -L -I E I L --E E Q Y -P G H A A D L S I K N L C P
MGV-GENOME-0034029_CDS_0019 2 AcrIE1 0.54 View Alignment MGV-GENOME-0034029_CDS_0019 M -L -P I N E ---Q E ----I ----L -----V -D -N --------L ----Q E V E T I L F N L S E Q -(60)
M + + L
AcrIE1 M E K K L S D A Q V A L V A A W R -K Y P D -L R E S L -E -E -A A S I L S L I -V F Q A E T L S D Q A N E L A N -Y
MGV-GENOME-0034029_CDS_0019 L -G S R --D E ----L G K -A -W -Y I -V Y K -R L Q K -E K A K -E -A -I -M K G -----E I Y N K K -R (120)
E + + E +G ++ +
AcrIE1 -I R R -Q G L E E A E G A C -R -N -I -D I M -R A -K W -V E V -C G -E -V -N Q H G I R V Y G D A I D R D V D
MGV-GENOME-0034029_CDS_0019 3 AcrVIA1_Lwa 0.53 View Alignment MGV-GENOME-0034029_CDS_0019 M L -P I N E Q ------E -I L V D N ---L Q E V E T ----I -L -F N -L -S E Q L G S R D E L G K A W Y I V (60)
M ++ EQ + +
AcrVIA1_Lwa M E K I K L I C L R I N N D -E L I T T D K D E W L K F I K R H R G -K -V S -S -I -E Q F N W K I ----P G N K L
MGV-GENOME-0034029_CDS_0019 Y K R -L Q -K E K A K E A I M K --G -E I Y N K K R (88)
+ E+ E
AcrVIA1_Lwa -Q K A -L E -Y S F D E L Y K F K Q -K E N R R E T D
MGV-GENOME-0034029_CDS_0019 4 AcrIE3 0.52 View Alignment MGV-GENOME-0034029_CDS_0019 M L P I -N E Q E -I ---L -V D N L Q E V E T -I L F N L S E Q L --G S R -D E -L G K A W Y I V Y -K R -L Q -(60)
M + L + E++ I L D
AcrIE3 M K I T N D T T T Y E V A E L M G S E A D E L D G R I M M G L L S R E C V V D T D D -L S E D Q ----W L -A L -I D
MGV-GENOME-0034029_CDS_0019 K -E K -A K E A I M K G -E I -Y -N -K K R (84)
+
AcrIE3 -E -S Q K V ----R R E -Q F -E -S D E A
MGV-GENOME-0034029_CDS_0019 5 AcrIIC4 0.52 View Alignment MGV-GENOME-0034029_CDS_0019 M -L P I N E Q E -I --------L ---V -D N L Q E V E T I L F N L S E Q ---L -G S -R ---D -E -L G K (60)
M + + I L + + ++ EQ +
AcrIIC4 M K I T S S N F A T I A T S E N F A K L S V L P K N H R E P I K G L F K S A V E Q F S S A R D -F F K N E -N -Y S K E
MGV-GENOME-0034029_CDS_0019 A W Y I V Y K R L Q K ----E K A -K E A I M K G E I Y N K K R (93)
+ K + EK AI E
AcrIIC4 L A E K F N K E A V -N E A V E K -L Q K A I D L A E K Q G I Q F
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;