3D Structure for MGV-GENOME-0010082_CDS_0004 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 93.29 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0010082_CDS_0004 1 AcrIE6 0.69 View Alignment MGV-GENOME-0010082_CDS_0004 M K G K V W N V R D Q T D T K L M E E L T Q T Y K G I D A A Y K L L R Q -A A -K ----Y D D A K F Y L D M A F Q K K (60)
M L + +D + L + Y + D +
AcrIE6 M N -N --D -----T E V L E Q Q I K A F E L L A D E L K D R L P T L -E I -L S P M Y T A V M V T Y D L I G K Q L
MGV-GENOME-0010082_CDS_0004 A K A T E I E -V E -I L -R R E ----I -N H -G --K -E -E (94)
A L + K
AcrIE6 A S R R A E L I E -I -L E E -Q Y P G H A A -D L -S I K N L C P
MGV-GENOME-0010082_CDS_0004 2 AcrIE1 0.65 View Alignment MGV-GENOME-0010082_CDS_0004 M K G K ---V -W N -V R D Q ----------T D ---T -K -L ----M E E L T Q T Y K G I D A A Y K L L R Q (60)
M K + + + + + + + +R
AcrIE1 M E K K L S D A Q V -A L -V A A W R K Y P D L R E S L E E A A S -I -L S L I V F Q A E T L S D Q A N E L A N Y I R R
MGV-GENOME-0010082_CDS_0004 A A K Y D D A K F Y L D M A F Q K K A K A T E I E V E I L R R E ---I N H G -K --E -E (106)
++A + +AK E+ E+ + +
AcrIE1 Q -G L E E A E G A C R N I D I M R A K W V E V C G E V N Q H G I R V Y G D A I D R D -V D
MGV-GENOME-0010082_CDS_0004 3 AcrIIC4 0.54 View Alignment MGV-GENOME-0010082_CDS_0004 M K --G K V -W N V R D ----Q -------T -D T K L M E E L T Q T Y K G I D A A Y K L L R Q A A K -Y D D A K (60)
MK ++ + + + A ++ + A
AcrIIC4 M K I T S S N F A T I A T S E N F A K L S V L P K N H R E P I K G L F K S A V E Q F S S A R D F F K N E N Y S K E L A E
MGV-GENOME-0010082_CDS_0004 F Y L D -M A F Q K K -A -K A T E I E V E I L R R E I N H G -K E E (95)
A E ++
AcrIIC4 K F N K E ----A V N -E -A V E K L Q K A I D L A E K Q -G I Q F
MGV-GENOME-0010082_CDS_0004 4 AcrIF25 0.53 View Alignment MGV-GENOME-0010082_CDS_0004 M K -G K -----V -W -N V R -D -Q -----------------------T ----D -T K L -M ---E (60)
M + E
AcrIF25 M D N D D K K P D A L I -H L R V P -A -E V K G R W V K E S R L E G M K L T D W I T G R V E A K -A L S -I A E V L E
MGV-GENOME-0010082_CDS_0004 E L T Q ----T -Y ----------------K G I D A A Y K L L R Q A ----A K Y D D A K F Y L D -----(120)
E+ I A DA +
AcrIF25 E A A A M A R S -L -E D S P I F Y R N K L C A D G I V T I Q Q Q A A R F S A -A T D D A T R L D A A L W A R E G Y Q L
MGV-GENOME-0010082_CDS_0004 ---M A -F -Q -----------------------K K A K A T E I E V E I L R R -E I N H G K -E -E (178)
GK +
AcrIF25 L S S G -L -P -D S Y S G A V P N E G R T G W V T A S Q M A R L F G G E A L W I E R C Q Q -E L G G A G K E D G R
MGV-GENOME-0010082_CDS_0004 5 AcrIF23 0.53 View Alignment MGV-GENOME-0010082_CDS_0004 M K -G K -V W N V -R ---D ------Q -------------------------------------(60)
M
AcrIF23 M T N F Q T W L D S A D I P V -Q Q N G Q W I D L E T G I A Y D P S Y N Y A A N T R R A S L S P R G I D A R A V A K T F
MGV-GENOME-0010082_CDS_0004 --------------------T -D -T K L ----M E E L T Q T Y K G I D A A Y K L L R Q A A K ---Y D D (120)
+ E G+ A K + +
AcrIF23 G G R A L T G T A R Q K E W A E K I R A E K -V Q Q -M N Q D Q A E M A C D P S G L L T A A K F W I E N -R N D S A Q E
MGV-GENOME-0010082_CDS_0004 A K F Y L D ----M A F Q ----K K A K A T E I -E -V -E -I L R -R E -I N H G K --E -E (170)
+ + + KA + I+ E
AcrIF23 I A G F V -M Q Q K A L L A Q H R S A K A A G Q A D K -V -A -K I A -A -E Y N A -L T A R W G F
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;