3D Structure for MGV-GENOME-0002210_CDS_0008 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 93.44 ;
Download
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0002210_CDS_0008 1 AcrIE6 0.71 View Alignment MGV-GENOME-0002210_CDS_0008 M K G K I W N V R D Q T D T N L M E E L T R T Y K E I D T A Y K L L K -Q -A A -K ---Y D D A K F Y L D M A F R K K (60)
M L + +D + L Y + D + +
AcrIE6 M N -N ---D ----T E V L E Q Q I K A F E L L A D E L K D R L P T -L -E I L S P M Y T A V M V T Y D L I G K Q L
MGV-GENOME-0002210_CDS_0008 A K A T E -I E V E I L R R E ---I -N H G -E --E E (89)
A + + +
AcrIE6 A S R R A E L I E I L E E Q Y P G H A A D L S I K N L C P
MGV-GENOME-0002210_CDS_0008 2 AcrIE1 0.64 View Alignment MGV-GENOME-0002210_CDS_0008 M K G K I ----W N V -R D -Q ----------T D ---T -N -L -M ----E E L T R T Y K E I D T A Y K L L (60)
M K+ + + + + + +
AcrIE1 M E K K L S D A Q V -A L --V A A W R K Y P D L R E S L E E A A S -I -L -S L I V F Q A E T L S D Q A N E L A N Y I
MGV-GENOME-0002210_CDS_0008 K Q A A K Y D D A K F Y L D M A F R K K A K A T E I E V E I L R R E ---I -N H G -E --E E (108)
+ ++A + +AK E+ E+ + + +
AcrIE1 R R Q -G L E E A E G A C R N I D I M R A K W V E V C G E V N Q H G I R V Y G D -A I D R D V D
MGV-GENOME-0002210_CDS_0008 3 AcrIIC4 0.57 View Alignment MGV-GENOME-0002210_CDS_0008 M K -G -K -I -W N V R D ----Q -------T -D -T N L M E E L T R T Y K E I D T A Y K L L K Q A A -K Y D D (60)
MK ++ + + +A K+ +
AcrIIC4 M K I T S S N -F A T I A T S E N F A K L S V L P K N H -R E P I K G L F K S A V E Q F S S A R D F F K N E N Y S K E L
MGV-GENOME-0002210_CDS_0008 A K F Y L D -M A F R K K -A -K A T -E I E V E I L R R E I N H G E E E (97)
A A ++ G
AcrIIC4 A E K F N K E ----A V N -E -A V E -K L Q K A I D L A E K Q G I Q F
MGV-GENOME-0002210_CDS_0008 4 AcrIF2-IC2 0.55 View Alignment MGV-GENOME-0002210_CDS_0008 M K -G K I W N V ---R D -Q T ------D -T N L ----M E E L T R T -----Y K E I -D T -A Y K L L K Q A (60)
M + + + + + Y L+ +
AcrIF2-IC2 M A T K T A Q M I A Q Q H -K -D T V A A C E A A E A -I A I A K D Q V W D G E G Y T K Y T F -D --D N S V L I Q S G
MGV-GENOME-0002210_CDS_0008 A K -----Y D D A K F Y L D M A F R K K A K A T E I E -V E -I L R R E I N H G E E E (105)
DDA A A +E I R + EEE
AcrIF2-IC2 T T Q Y A M D A D D A D S I K G Y A D W L D D E A R S A E A S -E I E -R L L E S V E E E
MGV-GENOME-0002210_CDS_0008 5 AcrIF23 0.54 View Alignment MGV-GENOME-0002210_CDS_0008 M K G -K -I W N ---V R --D ---------Q ---------------------------------(60)
M +
AcrIF23 M T N F Q T W L D S A D I P V Q Q N G Q W I D L E T -G I A Y D P S Y N Y A A N T R R A S L S P R G I D A R A V A K T F
MGV-GENOME-0002210_CDS_0008 --------------------T -D ---T -N L M E E L T R -T Y K E -I D T -A Y K L L K Q A A --K Y D (120)
+ E T K
AcrIF23 G G R A L T G T A R Q K E W A E K I R A E K V Q Q M N Q -D Q A E M A C D -P S G L -L T A -A K F W I E N R N D S A Q
MGV-GENOME-0002210_CDS_0008 D A K F Y L D M A F R K K A K A T E I E -V E I L R R -E --------I N H G E --E -E (167)
++ + A + +
AcrIF23 E I A G F V M Q Q K A L L A Q H R S A -K A A G Q A -D K V A K I A A E Y N A -L T A R W G F
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;