3D Structure for MGV-GENOME-0002210_CDS_0005 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold with pLDDT = 80.04 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see: Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment MGV-GENOME-0002210_CDS_0005 1 AcrIIA20 0.85 View Alignment MGV-GENOME-0002210_CDS_0005 M R K P K L N E --N -T M A K L E T Y G -H A ----E -C -G K Y Y Y E L -A D Y I D N E G N R Y T E L E R T D L K (60)
M+ ++ +ET G + G + E+ +
AcrIIA20 M K N Y E V T N E V K N L N T Q V E T I G Q A V D L Y K -E -Y G S N T I -V W S I D -K -N E D L I D E V T E -L V A
MGV-GENOME-0002210_CDS_0005 -T G D V K E F -D W G K F -T K E -A (80)
+
AcrIIA20 E -Y -----A E K ---G -T V I K
MGV-GENOME-0002210_CDS_0005 2 AcrIF7 0.85 View Alignment MGV-GENOME-0002210_CDS_0005 M -R ------K P K L N E N T -M A K L E T Y G -H A E -C ---G K Y Y Y E L A D Y I -D N E G N R Y T E -L -E (60)
M + PK T + G + + + Y E
AcrIF7 M S H A S H N G E A P K R ----I -E A M T T F T S I V T T N P D F G G F E F Y V E A G Q Q F -D D S A Y E E A -Y G
MGV-GENOME-0002210_CDS_0005 R -T D L -----K T -G D -V -K E F D W G K F T K ---E A (93)
+ G + EA
AcrIF7 -V S V P S A V V E E -M N A K -A A Q L K D G E W L N V S H E A
MGV-GENOME-0002210_CDS_0005 3 AcrIIA12 0.85 View Alignment MGV-GENOME-0002210_CDS_0005 M R K P K L N E N T -M A K L E T ---Y -G H A E ---C ------G -K Y -Y Y E L A D Y I D N ----E G N R Y (60)
M K + + + + G
AcrIIA12 M S K T M Y K N D -V I E L I K N A K T N N E E L L F T S V E R N T R E A A T Q Y F R C P E K H V S D A G V Y Y G E D F
MGV-GENOME-0002210_CDS_0005 T E L E R T D L K T G D V K E F D W G K F -T -K -E A (88)
D+
AcrIIA12 E F D G F E I F E -D D L I Y --T R S Y D K E E L -N
MGV-GENOME-0002210_CDS_0005 4 AcrIE9 0.84 View Alignment MGV-GENOME-0002210_CDS_0005 M R K P K L N E N T -M --A K L E -T -Y G H A E C ----G K Y Y Y E L A D Y I D N -E G N R Y T E L E R -T D L K (60)
M + + GK G
AcrIE9 M E M Q I N S R K -L G R T I T F S R -P G A S Y I F A D L N G K S G T L G C Q I C S -G -G G T M G S T L S Y D G D D
MGV-GENOME-0002210_CDS_0005 T ---G D V K -E -F -D W G K F T K E A (82)
+ + +
AcrIE9 Q A Q F E A I C R -R -W -Y R A H V R G E
MGV-GENOME-0002210_CDS_0005 5 AcrIF18 0.84 View Alignment MGV-GENOME-0002210_CDS_0005 M R K P K L N E N T M ----A --K L E T Y G H A E C -G K Y Y Y E L A D Y I D N E G N R Y T E L E R T D L -K T G D (60)
M + T + G + G + G
AcrIF18 M T T --I K A A Y I S K D Q N W N D G T T T Y W F D V N G E T F G V V H -G ----G E S -W N A K V V -D C -D G A
MGV-GENOME-0002210_CDS_0005 V K -E F --D W G K F -T -K --E A (80)
D
AcrIF18 P S D Q Y T V D Q F N I T E D M I A -E
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;