3D Structure for LC547238_CDS_0099 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 88.58 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment LC547238_CDS_0099 1 AcrIE1 0.70 View Alignment LC547238_CDS_0099 M E ---L -A D F N I A ---A R -----------N -D -W -L T G D M R D L N T -A V H -N L L D -L -L E -(60)
ME A ++ + L+ + + +
AcrIE1 M E K K L S D A Q V A L V A A W R K Y P D L R E S L E E A -A -S -I L S L I V F Q A -E T L -S D -Q A N E -L -A N
LC547238_CDS_0099 L -G -A E -D V S I S E Y R A Y M E G V S E A L E H L T N S L T E L T -G L F V A -A -K -R -I Q T K V D K K M E E (120)
E +E + ++ +V ++++ + +
AcrIE1 -Y -I R -R -Q -------G L E ----E A E G A C R N I D I M R A -K W V E V -C -G -E V N Q H G I R V Y G D
LC547238_CDS_0099 T S N -G -I (127)
AcrIE1 A I D R D V D
LC547238_CDS_0099 2 AcrIE6 0.67 View Alignment LC547238_CDS_0099 M E L A D F N I A A R N D W L T G D M R D L N T A V H N L L D L L E L G A E D -V S I S E Y R A Y M E G V S E A L E H L (60)
M + + ++ L D L V + +
AcrIE6 M -N --N D T E V L E -Q ---Q I K A F E L L A D E L K D R L P T L E I -L --S ----P M Y T A V M V T Y D L I
LC547238_CDS_0099 T N S L -T E L T G L F V A A K -R I Q T -K V -D K K M E E T S -N -G -I (99)
+L + + +
AcrIE6 G K Q L A -S R R A E L I E I L E E Q Y P G H -A A D L S I ---K -N L C P
LC547238_CDS_0099 3 AcrIC3 0.61 View Alignment LC547238_CDS_0099 M E L A D F -N I A ------A R N D W ---L T G D M R D L N -T -A V H -N L L D L L E L G ---A E D V S I S E (60)
M + + + +G + L + + +
AcrIC3 M S I Q V T S T N G R T V N L E I E L G S V V A S S G Q V K F M A D -K T -D R G L E S R F L V P E A G N R R I E V A L
LC547238_CDS_0099 Y R A Y M E G V S E A -L -E H L -T -N -S L -T E -L T G L -F V A A K R I Q -T K -V D -K K M E E T S N G I (118)
+ L L + + +
AcrIC3 T ---G R D L E A -A -N A -L F -S -E -L A A -S V E -A T N E M Y R E -L D A -E R -A Q -I N K A L E -G
LC547238_CDS_0099 4 AcrIIC4 0.58 View Alignment LC547238_CDS_0099 M E L A D F N I A -A R N D W L -T -G D M R D L -N -T A V H N -L L D -L L E L G A E D V S I -S E Y R A Y M E G V (60)
M + + + + L + R G+
AcrIIC4 M K I ---T -S S N F ----A -T -----I A -T ---S E N F A -K L S V -----L P -K -N H R E P I K G L
LC547238_CDS_0099 S E A L E H L T N S L -T E -L T G L F V ----A A K R ----I -Q T K V -D K K M ----E -E ---T S N G I (119)
+ +S+ +A + + K +
AcrIIC4 F K S A V E Q F S S A R D -F F K -N E N Y S K E L A E K F N K E -A V N E -A V E K L Q K A I -D L A E K Q G I Q F
LC547238_CDS_0099 5 AcrIF2-IC2 0.53 View Alignment LC547238_CDS_0099 M -E L A D F N I A A R N D W L T G D M R D L N T A V H N L L D L L E L -G -A E D V S I S E ----Y R A Y -M ---(60)
M IA + A+ + D E
AcrIF2-IC2 M A T K T A Q M I A Q Q H K D T V A A C E A A E -A I A I A K D -Q V W D -G -E G ---Y T K Y T F ----D -D N S
LC547238_CDS_0099 --E --G V S -E ---A L E H L T N S L T E L T G L F V -A A K R I Q -T K V D K K M E E T S N G I (112)
S+ A+ + + +++ E
AcrIF2-IC2 V L I Q S -G -T T Q Y A M D A D D A D S I K G Y A D W L D D E A R S A E A S E I E R L L E S V E E -E
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;