3D Structure for LC513943_CDS_0060 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 94.25 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment LC513943_CDS_0060 1 AcrIE6 0.71 View Alignment LC513943_CDS_0060 M D L S -N V S ---S D E L -------L -S -L -A D N V T R L K N L K D A I K E Y E A -Y Y M Q V -N E -D -Y (60)
M V L A+
AcrIE6 M N N D T E V L E Q Q I K A F E L L A D E L K D -R -L P T L E I -L S P M Y T A V M V T Y D L I -G K Q L A -S -R R
LC513943_CDS_0060 A R V I N E I A D L E L -K L K E ----V -G L (85)
A +I + + ++ +
AcrIE6 A E L I E I L E E Q Y P G H A A D L S I K N L C P
LC513943_CDS_0060 2 AcrIE1 0.69 View Alignment LC513943_CDS_0060 M -D -L S ---N -V -S S -------D ----E L ----L -S -L ----A D N V T -R -L K -N -L ---K (60)
M LS L + ++ +
AcrIE1 M E K K L S D A Q -V -A L V A A W R K Y P -D L R E S L E E A A -S -I -L S L I V F Q A E T -L -S D -Q A N E L A
LC513943_CDS_0060 ----D A I K E -Y E A ----Y Y M Q V N E D Y A R V I N E I A D L E -L -K L K E V ----G -L (112)
E + V E+ +
AcrIE1 N Y I R R Q G L E E -A E G A C R N I D I M R A K W V E V C G E V N Q H G I -R V Y G D -A I D R D V D
LC513943_CDS_0060 3 AcrIC3 0.61 View Alignment LC513943_CDS_0060 M -D L S -N V ---------S -S -----D E L ---L -----S L -------------A -----D N (60)
M + A +
AcrIC3 M S I Q V T S T N G R T V N L E I E L -G S V V A S S -G Q V -K F M A D K -T D R G L E S R F L V P E A G N R R I E V
LC513943_CDS_0060 V T R L K N L K D A I K -E Y E A -Y Y M Q -V -N -E D -Y -A -R -V -I -N -E -I -A -D -L -E -L -K L -K (120)
+ + L A +
AcrIC3 A L T G R D L E A A N -A -L F S E -L A A S -V -E -A T -N -E -M -Y -R -E -L -D -A -E -R -A -Q -I N -
LC513943_CDS_0060 E V -G L (125)
+
AcrIC3 K A L E G
LC513943_CDS_0060 4 AcrIF23 0.57 View Alignment LC513943_CDS_0060 M -D L S -N --V ----S ---------------S ---D E L -L ---------------------(60)
M + +
AcrIF23 M T N F Q T W L D -S A D I P V Q Q N G Q W I D L E T G I A Y D P S Y N -Y A A N T R R A S L S P R G I D A R A V A K T
LC513943_CDS_0060 -------S L --------------------------A D N V T R -L -K -N L K ----D A I K --- (120)
A + + +
AcrIF23 F G G R A L T G -T A R Q K E W A E K I R A E K V Q Q M N Q D Q A E M A C D P S G L -L -T A A -K F W I E N R N D S A
LC513943_CDS_0060 -E -Y -E A ----Y Y M Q V N ---E -D -Y -----A R V I N E -I -A D -L E L K L K E -V -G -L (175)
A + A + A +
AcrIF23 Q -E -I -A G F V M Q Q K A L L A Q H R S -A -K A A G Q A D K V A K I -A A -E Y N A L -T A R -W -G F
LC513943_CDS_0060 5 AcrIIC4 0.55 View Alignment LC513943_CDS_0060 M -D L S -N V ---S -S -D -----------E -L -L -S -L A D N V T R L K N L K D -A I K -E Y E -A --(60)
M S N + + + A +
AcrIIC4 M K I T S S N F A T I A T -S E N F A K L S V L P K N -H -R -E -P I K G L F K S A V E Q F S S A -R D F -F K -N E
LC513943_CDS_0060 -----Y Y M Q V N -E D Y A R V I N E I A D L E L K L K E V -G -L (96)
N E ++ + + +
AcrIIC4 N Y S K E L A E K F N K E A V N E A V E K L Q K A I D L A E K Q G I Q F
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;