3D Structure for LC483177_CDS_0306 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 93.07 ;
Download
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment LC483177_CDS_0306 1 AcrIE6 0.73 View Alignment LC483177_CDS_0306 M K F S L Y Y L N D H R D Y L L D T L A K L D N A K Y -F A S K N E I Y I --T N -Y E H E K V K R L R D K I V S E I Q (60)
M L + L + + + ++S
AcrIE6 M N N D T E V L E Q Q I K A F E L L A D E L K D R L P T -L --E I --L S P M Y T A V M V T Y D L I G K Q L A S R R A
LC483177_CDS_0306 E V N D S I S A I E -L I S -S W L E -E K -S C (85)
E+ + + L
AcrIE6 E L I E I L E E Q Y P G H -A A D L S I K N L C P
LC483177_CDS_0306 2 AcrIE1 0.66 View Alignment LC483177_CDS_0306 M K ---F -S L Y Y L N ----------D ----H -R -D -Y -L L ----D T L A K L D N A K Y F A S K N E -(60)
M L + L ++ L +
AcrIE1 M E K K L S D A Q V A L V A A W R K Y P D L R E S L E E -A -A -S -I L -S L I V F Q A E T L S D Q A N E L A N Y I R
LC483177_CDS_0306 I Y I T N Y E H E K V K R L R D K I V S E I Q E V N D S -I S A I E L I S S W L E E -K S C (106)
E E + R D EV + + + +
AcrIE1 -R Q G L E E A E G A C R N I D I M R A K W V E V C G E V N Q H G I R V Y G D A I D R D V D
LC483177_CDS_0306 3 AcrIIC4 0.62 View Alignment LC483177_CDS_0306 M K -F --S L -Y Y L N -------D ----------H R D Y L -L D T L -A K L D -N A K Y F A S K N E I Y I (60)
MK + + L ++ +A+ F NE
AcrIIC4 M K I T S S N -F A T I -A T S E N F A K L S V L P K N H R E P I K G L F -K S A V E -Q F S S A R D F F K -N E N --
LC483177_CDS_0306 T N Y E H E K V K R L R -D -K I V S E I Q -E V N -D -S -I -S A I E L I S S W L E E K S C (108)
Y +E + + ++ + + +
AcrIIC4 --Y S K E L A E K F N K -E ----A V N E -A V E -K -L -Q -K A I D L A E K Q G I Q -F
LC483177_CDS_0306 4 AcrIF23 0.57 View Alignment LC483177_CDS_0306 M K F S L Y Y L N ------D H R D ---Y L L -----------------------------------(60)
M L L
AcrIF23 M T N F Q T W L D S A D I P V Q Q N G Q W I D L E T G I A Y D P S Y N Y A A N T R R A S L S P R G I D A R A V A K T F G
LC483177_CDS_0306 ------------------D T L A K -L D N A K Y F A -S K N E I Y I T N Y E H E K V K -R L -R D K I V S E (120)
+ + + + + ++E
AcrIF23 G R A L T G T A R Q K E W A E K I R A E K V Q Q M N Q D Q A E M A -C D P S G L L T A A K F W -I E N -R -N D S A Q E
LC483177_CDS_0306 I Q E V N D S I S A I E ----------------L -I S S W L E E -K ---S C (164)
I + A+ I
AcrIF23 I A G F V M Q Q K A L L A Q H R S A K A A G Q A D K V A -K I A A E Y N A L T A R W G F
LC483177_CDS_0306 5 AcrIB2 0.57 View Alignment LC483177_CDS_0306 N /A (3)
N/A
AcrIB2 N /A
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;