3D Structure for LC483177_CDS_0299 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 85.89 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment LC483177_CDS_0299 1 AcrIE6 0.71 View Alignment LC483177_CDS_0299 M Q S K L K E L L D A ---Y A D K M Y E L G E N -S E F C E -S -------E -F Y M E L D L E I T Q I R E E I --(60)
M++ L EL + S Y + + + R E+
AcrIE6 M N N D T E V L E Q Q I K A F E L L A D E L K D R L P T L E I L S P M Y T A V M -V T Y D L I G K Q L A S R R A E L I E
LC483177_CDS_0299 --D E I ----L -S Q -----F -S (81)
+E
AcrIE6 I L E E Q Y P G H -A A D L S I K N L C P
LC483177_CDS_0299 2 AcrIIC4 0.61 View Alignment LC483177_CDS_0299 M Q --S -K L K E ---------L ----L D ----A --------Y A D K M Y E L G E N ------S E F C (60)
M S ++ + + S
AcrIIC4 M K I T S S N F A T I A T S E N F A K -L S V L P K N H R E -P I K G L F K S A V E Q F S S A R D F F K N E N Y S K E L
LC483177_CDS_0299 E S E F Y M -E L D L E I T -Q I R E E I D E I L -S Q --F S (92)
F + E+ + +++ Q
AcrIIC4 A E K F N K E -A V N E A V E -K L Q K A I D L A E K Q G I Q F
LC483177_CDS_0299 3 AcrIE1 0.57 View Alignment LC483177_CDS_0299 M Q ---S K -L -K E ----L -------L ----D A ----Y A D --------K -M Y -E -L -G -E -N (60)
M S + +
AcrIE1 M E K K L S D A -Q V -A L V A A W R K Y P D L -R E S L E E A A S I L S -L I V F Q A E T -L S -D -Q -A -N -E -
LC483177_CDS_0299 ----S E F C E S E F Y M E L D L E I T Q I R E E I D E I L S Q ---------------F -S (111)
E + I R E+
AcrIE1 L A N Y I R R Q G L E E A E G A C R N I D I M R A K W V E V C G E V N Q H G I R V Y G D A I D R D V D
LC483177_CDS_0299 4 AcrIF23 0.57 View Alignment LC483177_CDS_0299 M Q S --K -L K E -------L L ----D ------------------------------------(60)
M++ L D
AcrIF23 M T N F Q T W L D -S A D I P V Q Q N G Q W I D L E T G I A Y D P S Y N Y A A N T R R A S L S P R G I D A R A V A K T F
LC483177_CDS_0299 ------------A ----Y A -D K -M Y E ---L G ----E N -------S E F C -E ----S ----E (120)
F E S
AcrIF23 G G R A L T G T A R Q K E W A E K I R A -E K V Q Q M N Q D Q A E M A C D P S G L L T A A K F W I E N R N D S A Q E I A
LC483177_CDS_0299 F Y M E -L D ----L --------E I T Q I R E E I D E I L S Q ----F -S (162)
+ I + +
AcrIF23 G F V M Q -Q K A L L A Q H R S A K A A G Q A D K V A K I A A E Y N A L T A R W G F
LC483177_CDS_0299 5 AcrIF2-IC2 0.56 View Alignment LC483177_CDS_0299 M -Q S K L K E ---L L D A Y A D ----K --M Y E L -G --------E N S E ---------F C --E ---(60)
M + + +
AcrIF2-IC2 M A T K T A Q M I A Q Q H K D T V A A C E A A E A I A I -A -K D Q V W D G E G Y -T K Y T F D D N S V L -I Q -S G T
LC483177_CDS_0299 ----S ----------E F Y M -E -L D L E I T -Q I -R E E I D E I L S Q -F -S (106)
Y LD E+ EI+ +L +
AcrIF2-IC2 T Q Y A -M D A D D A D S I K -G Y A D -W L D D E A R S A -E A S E I E R L L E S V E E E
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;