3D Structure for LC483177_CDS_0017 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 95.03 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment LC483177_CDS_0017 1 AcrVA5 0.75 View Alignment LC483177_CDS_0017 M Y E Q I T I Y D E D E K G S I E G Y K V S S D Q E Q I V N W F T K R F L V P P V L E K N I N V A V I N N L Y V E E D S (60)
M I + G I + I + V
AcrVA5 M -K -I E L -S G ---G Y I C Y S I ------E ------------------E D E V T I D M V E V T -T -
LC483177_CDS_0017 R G E G K G T L L L S N F I D E C -Y D C Q F I F L E C D N -G -E D N A F S L L D W Y K S F D F E I L C N G E -N P I (120)
+ G G+ L+ D I L + L+++Y S DFE +
AcrVA5 K R Q G I G S Q L I D M V K D V A R E V G L P I G L Y A Y P Q D D S I S Q E D L I E F Y F S N D F E Y D P D D V D G R L
LC483177_CDS_0017 M V F E N F (126)
M
AcrVA5 M R -W -S
LC483177_CDS_0017 2 AcrIB1 0.61 View Alignment LC483177_CDS_0017 M ----------------------------------------------------Y E Q I T I -(60)
M + +
AcrIB1 M E S K N L R K L L N E Y E E I D I N E M L K N F R S I K N S G T K N D I E I F L H E K A I K F E K S S I S S T Y V V F
LC483177_CDS_0017 Y D -E D E K G S I E G Y K V -S S ---D -Q E Q I V N W F T K -R F L V ----P P V L E K N I N V A V I N N L Y V (120)
+ + G + + + + + + ++ +L
AcrIB1 S E D N E I L G Y F T I A N R S L V I P K E N F G I L S K T Q Q -K K L G N S A A I L K N G D L M T S S F L L G Q L G K
LC483177_CDS_0017 E E -D -S R G E G K G T L L L S ----N -F -I D -E C ---Y D C Q F I F L E C D N G E D N A F S L L D W Y K S F (180)
D G LL+ + I+LEC L+ +Y +F
AcrIB1 N Y S D D I E N L I T G R E L L T F A Y D -L -F L -K -I K E L I N V K Y I W L E C Q -N ---E P K L I S F Y Q N F
LC483177_CDS_0017 D F E I L C N ---G E -N P I M V F E N F (202)
F L + E +M+ E
AcrIB1 G F K M L E S L T S E E G L K V M I M E L K
LC483177_CDS_0017 3 AcrVIA2_new 0.44 View Alignment LC483177_CDS_0017 M --------------------Y E Q I T I Y D ------E -------D -E K G S I E G -Y K V S S D Q (60)
M + I S+ +
AcrVIA2_new M K N I H Q K I Q L N K L Q V K T V Q N K G K D L L I N A P T G S G K T E A S L L A V S D A S K S V S Y L L P T V V S T
LC483177_CDS_0017 E Q I V N W F T K R F L V P P V L E -K ------------N --I ---N --------------------(120)
+ +
AcrVIA2_new N V M Y L R L K R D Y K -L N L S -V -Q T S T K K E I S N F A -E G -V H I K L E C P D F A L I D F I K T G K K T L G
LC483177_CDS_0017 -V A V I N N L Y V E E D S R G E G K -G T -L L L S N F I D E C Y D C Q F I F L E C D N G E D N -A -F -S -L -L D (180)
++ +L + Q IF+ ++ +
AcrVIA2_new D T I I C D E F D H --Y ---P E M V -K S -A L M E Y K H T F S E T Q I I F V S A T L N K E S L M G -I -D -L E E
LC483177_CDS_0017 W Y K S ------F D F E -I -L C N -G E -------------------------------------(240)
+
AcrVIA2_new -I A L D T E K N L I K -Y K -V -Y P N D D F R M D D I I N N G K A Y G K K I G I I F N S I S Q L E C F I K P G E D F
LC483177_CDS_0017 ------------------------------------------------------------ (300)
AcrVIA2_new Y D D H F S K F K K G E N D Y I I H S Q V D D Y D K A L A E N A I V N N D F S V L I G T D S I S Y S I D V N F D I L I M
LC483177_CDS_0017 ------------------------------------------------------------ (360)
AcrVIA2_new M A S S E M A T N I Q R L G R C N R L N K H V T D Y N L Y F F G S Y L S D L K A P F I N E N V A F N N L E R I T S S H L
LC483177_CDS_0017 ------------------------------------------------------------ (420)
AcrVIA2_new C I S R K N I N E I K K E L P V S E I M E Y I E V K K H V L D E E E S L R P I P F K V R R G I E K E V V K F N A K G L K
LC483177_CDS_0017 ------------------------------------------------------------ (480)
AcrVIA2_new Q T K V I K T Y Q T F N M M D L K Y A F C E E Y Y Y D K K N S R A L D V I Q Q F D F E N D W F D R G D F T V K L Y N L K
LC483177_CDS_0017 ---------------------------------------------------N P I M V F -E - (540)
+ + +
AcrVIA2_new T E Q Q A L K Q L L L K L E E Y I E P E A P D E T D E D F Y Y R N P D I L L K Y T D Y D K L F I K G W T Y S I L S I D G
LC483177_CDS_0017 --N ---F (547)
AcrVIA2_new K T -I Y I A
LC483177_CDS_0017 4 AcrIF5 0.43 View Alignment LC483177_CDS_0017 M Y E -Q I T -I Y D E D E K -G S I E G Y K V S S D Q E Q I V N W F T K R F L V P P V L E K N I -N -------V -(60)
M ++ + +
AcrIF5 M S R P T V V T V T E --T P R ----------------------------N -P G -S Y E V N V E R D -G
LC483177_CDS_0017 A -V I N N L Y V E E D S R G E -G K G T -L L L S -N F I D E C Y D C Q F I F L E C D N G E D N A F S L -L D W Y K S (120)
+ S + + E + +
AcrIF5 -K M V V G R A R A G -S D P -G A A A -A K -A M Q -M A M E W G S -P N Y V I L G -----S ----N ------
LC483177_CDS_0017 F D F E I L -C -N -G -E N P I M V F E N F (143)
+L +
AcrIF5 --K -V L A -F -I -P -E Q L -R V -K M
LC483177_CDS_0017 5 AcrIIA33_Seq 0.39 View Alignment LC483177_CDS_0017 M Y E Q I T I Y -D -E D E K G S I E G -Y K V S S D Q E Q -I V N W F T K R F L V P P V L E K N I N V A -V -I N N L (60)
M + + + +
AcrIIA33_Seq M E -L N F V G Q -F D N ---G H D F Y --------D V --------------------E -K -F V D V N
LC483177_CDS_0017 Y V E E D S R G E G K G T L L L S N F I D E C Y D C Q F I F L E C D N G E D N -A F S L L D W Y K -S -F D F E I L C N (120)
+ D + +LL + D ++L
AcrIIA33_Seq V E T G R L ----S -D E D I I K V Y D A L R N E H R L R -R G K G K ---Y -G N L L S F A -E -Y G D E D V L T D
LC483177_CDS_0017 ---G E ----N P -I M V -F -E N F (141)
P
AcrIIA33_Seq T T Y W Y E E D I L P A Q D R L -E -E L
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;