3D Structure for KY705273_CDS_0026 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 88.48 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment KY705273_CDS_0026 1 AcrIIA25 1.00 View Alignment KY705273_CDS_0026 M K N R L L G S R Y T D A I K N D C G T A N K M S N I Y N K L N K D S L R E I H S A L Y G L L T A G Y D I S N M R N I E (60)
MKNRLLGSRYTDAIKNDCGTANKMSNIYNKLNKDSLREIHSALYGLLTAGYDISNMRNIE
AcrIIA25 M K N R L L G S R Y T D A I K N D C G T A N K M S N I Y N K L N K D S L R E I H S A L Y G L L T A G Y D I S N M R N I E
KY705273_CDS_0026 E L E K Y V N L K K S R G Q L L N V S S D D I K L Y H K L F V I R F G K (96)
ELEKYVNLKKSRGQLLNVSSDDIKLYHKLFVIRFGK
AcrIIA25 E L E K Y V N L K K S R G Q L L N V S S D D I K L Y H K L F V I R F G K
KY705273_CDS_0026 2 AcrVIA1_Lwa 0.47 View Alignment KY705273_CDS_0026 M K N R L L G S R Y T D -A I K N D C G T A N K M S N I Y N K L -N K D S L R E I H S A L Y G L L T A G Y D I S N M R N (60)
M + + + + G ++ +
AcrVIA1_Lwa M E ------K I K -L I C L R I -N ---N -D E L I T T -D K D -E W L K F I K R H R G K V S S I E Q F N W ---
KY705273_CDS_0026 I E E L E -K Y V N L -K -K -S R G Q L L N V S S D D I K L -Y H K L F V I R F G -K (104)
++ S D++ R
AcrVIA1_Lwa K I P G -N -K L Q K A -L -E -------Y S F D E L Y K F K -Q K E N R R E -T D
KY705273_CDS_0026 3 AcrIB4 0.45 View Alignment KY705273_CDS_0026 M K N R L L G S R Y T D -A I -K -N D C G T A N K --M S N I Y N -K L N K D S L R E -I -H S -A -L Y G L L -T -(60)
M + A T + ++ +Y L
AcrIB4 M E -S -V E K ----Q A -Y -E -A G V T --Y R K -K ---Q L -V S E ---G -N -Y Q -T -L V Y K -L T -S
KY705273_CDS_0026 A -G Y D I S N M R N -I E E L E K Y V N L -K K S -R G Q L L N V ----S S D D I K L ---Y H K L -F V -I R F G (120)
+ E + K R Q+ +V + K +
AcrIB4 -I I K K G ----S K -E A F V E T L L D Y S K V K R K Q I P S V F Q E D V M N E E K T F K S S A Y A F V -I G -L T
KY705273_CDS_0026 K (121)
AcrIB4 Q
KY705273_CDS_0026 4 AcrIF16 0.44 View Alignment KY705273_CDS_0026 M K --N -R L L G S R Y T D A I K ---N -------D -C G ---T A N K M S N I -Y N K ------------(60)
M + Y DA++ T+ K +
AcrIF16 M S L S D K K E Q K E A Y L D A L R I A P L D R G V L K R I H A V N D N T L D K W L Y V A D R -Y P T F R A C W E L W M
KY705273_CDS_0026 ---L ------------N -K D S -L R E I H S A L Y G L L T A G Y D I S N M R N I E E L E K Y V N L K K S -R (120)
+ R I V+ K
AcrIF16 F Q R K R R V L I S R K L H V L I N R S -T N R T I E A F E -K T Y ---P -P E E R V V G K S Y R D L V T E K G E R S
KY705273_CDS_0026 G Q L -L -----N V --------------------------S S D D I K L Y H K -L -F -V I R -F G -(180)
+ + DDI + R
AcrIF16 A N M Y I I N G E V V G A K D A S I L L G Y S S Y N T L Y A K M K R L G I Q P G D D I S H L K P E -K -R -G R K K E C
KY705273_CDS_0026 K (181)
AcrIF16 S
KY705273_CDS_0026 5 AcrIF17 0.44 View Alignment KY705273_CDS_0026 M K -N R L ---L G S ----R -Y T D A I K N -D --------C G T ---A -N K -M S N I Y N K L N K D S L R (60)
M L + T + +
AcrIF17 M F S E I K F S S L S D H A L A E L I K -M A M E E F Q Q R L I K P G V N T I K T -V D -V E P V V L H A P S D N E M V
KY705273_CDS_0026 E I H S A L Y G L L T A G Y D I S N M R N I E E L E K Y V N L K K S R G -Q L L N V S S D D I K L Y H K L F V I R F -G (120)
I + L AG I + + + D K V F
AcrIF17 F I N N C L K K -R R A G E Y I -H A S M K D K Y R D L T R K Y P Q W F S -V K A Y P D D L R G S V S K H Y V D Y F T K
KY705273_CDS_0026 -K (122)
AcrIF17 K E
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;