3D Structure for KM373208_CDS_0006 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 97.34 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment KM373208_CDS_0006 1 AcrIIA7 0.73 View Alignment KM373208_CDS_0006 M T F E E I L P L I K K G K K A S R T G W N G K D M F V V A -Q K G -Y P E G I P -A ----N K ----Q T A -D A -(60)
MTF +L +K+G+ + R GWNGK MF+ P +
AcrIIA7 M T F G Q A L E S L K R G H L V A R K G W N G K G M F I F M R P E D S L P T N M I V N Q V K S L P E S F K R W V A -N N
KM373208_CDS_0006 Y E L E E G A L F K V E P Y L Q M R T A T G S H V M W C I S N -L D V F A N D W E V Y N K (105)
E K YL M+ A G+ V + + D ANDW +
AcrIIA7 H G D S E T D R I K F T A Y L C M K A A D G T I V N G W L A S Q T D M L A N D W V I V -E
KM373208_CDS_0006 2 AcrIF18 0.52 View Alignment KM373208_CDS_0006 M T F E E I L P L I K K G K K A S R T -G W -N G K D M F V V A Q K G -Y P E G I P A N K Q T A D A -Y E L E E G A L F (60)
MT I K W G G F
AcrIF18 M T T --I ----K A A Y I S K -D Q N W N D G T --------T T -------------Y W -F D V N G E T F
KM373208_CDS_0006 -K V --E P Y L Q M -R T --A T G S H V -M W C I S N L D V F A N D W E V Y N K (102)
V + G + + + +
AcrIF18 G V V H G G E S W N A K V -V D C D G A P S D Q Y T V D Q F N I ---T E D M I A E
KM373208_CDS_0006 3 AcrVIA3 0.51 View Alignment KM373208_CDS_0006 M T F E E -I -L P L I K K G K K A S R T G W N G K D M F V V A Q K G Y P E G -I P A N K Q T A D A Y E -L -E -E G A (60)
M E ++ G +G V G + L G
AcrVIA3 M F -K E F -L E K C L R Y G N L Y I L E E -T G D -R K K V K R I S K R H G K -V -T -E A -S --V L L F -D S G T
KM373208_CDS_0006 L F K -V -E P Y L Q M R T -A T G S H V M W C I S N L D V F A N D W E -V Y N K (101)
+G + + K
AcrVIA3 K R T T -I N E I -Y L --N S Q G Y F I -I R D Q --K R L -K L E -K --F K
KM373208_CDS_0006 4 AcrIIA4 0.51 View Alignment KM373208_CDS_0006 M T F E E I L P L I K K -G K K A S R T G W -N -G -K D M F V V A Q K G Y P E G I P A N K Q T A D A Y E L E E G -A L (60)
M+ +++ IK + +G + + ++ Y + E
AcrIIA4 M N I N D L I R E I K N K D Y T V K L S G T D S N S I T Q L I I R V N N -----------D G N E Y V I S E S E -N
KM373208_CDS_0006 F K V -E P Y L Q M R T A T G -S H V M W C I S N L D V F A N -D -----W -E V Y N K (105)
+ E ++ + F N
AcrIIA4 E S I V E K F I S A F K ---N -G W N Q E Y E D E E E F Y N D M Q T I T L K S -E -L N
KM373208_CDS_0006 5 AcrIIA12 0.51 View Alignment KM373208_CDS_0006 M T ---F -E E I ---L P L I K -K -G K K A S R -T G W -N -G --K D M F V V A Q K G Y P E G -I P A N -K -Q (60)
M+ ++ + +K + + N
AcrIIA12 M S K T M Y K N D V I E L I K N A K T -N N E E L L F T S V E R N T R E A A ----------T Q -Y F R C P E -K H
KM373208_CDS_0006 T A D A Y E L E E G A L F K V E P Y L Q M R T A T G S H V M W C -I S N L D V F A -N D W E -V Y N K (111)
DA F + +
AcrIIA12 V S D A G V Y Y G -E D F E F D G F -E I --F E D -D L I Y T R S Y D K ----E ----E --L N
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;