3D Structure for AP018486_CDS_0009 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 85.54 ;
Download
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment AP018486_CDS_0009 1 AcrIE1 0.74 View Alignment AP018486_CDS_0009 M A E I ---T F A D F ---M ----E -F A R E A G E V K L E L Q D L R T E V R I V A D H L Q A M A D T Y V S E A Q (60)
M + + E+ L+ + + + D ++ A
AcrIE1 M E K K L S D A Q V A L V A A W R K Y P -D L R E S L E E A A S I L S L I V F Q A E T L S D Q A N E L A N Y I R ----
AP018486_CDS_0009 -T S T N T V N R E F T -Q A K A Q A Y K V A A D K I R E T L R D C C A L C N E K G ----H -E A Q I -H -F (116)
+ A +D R + C N +G +A
AcrIE1 R -Q -------G -L -E E A E G A C R N I D I M R A K W V E V C G E V N Q H G I R V Y -G D A I D R D V D
AP018486_CDS_0009 2 AcrIE6 0.67 View Alignment AP018486_CDS_0009 M A E I T F A D F M E F A R E A G E -V K L E L Q D L R T E V R I V A D H L Q A M A D T Y V S E A Q -T S -T N T V N R (60)
M +++ + D + +
AcrIE6 M N -N D ---T E V L E ----Q Q -----------I K A F E L L A D E L K D R L P T L -E I --L --S P M Y
AP018486_CDS_0009 E F T Q A K A Q A Y K V A A D K I R E T L R D C C A -L -C -N E K G -H ---E A Q -I H -F (108)
+ + + R L + + +
AcrIE6 T A V M V T Y D L I G K Q L A S R R A E L I E I L E E -Q -Y P G H A A D L S I K --N L -C P
AP018486_CDS_0009 3 AcrIIC4 0.57 View Alignment AP018486_CDS_0009 M A E I T F A D F M E F A R -----E A G E V K L E L Q -D L R T E V R I V A D H L Q -A M A D T Y V -S E A Q T S T (60)
M IT F A + + ++ + +++ D +
AcrIIC4 M K -I T S S N F A T I A T S E N F A K L S V L P K N H R E P I K G L F K S A V E Q F -S S A R D F -F K -N E N Y --
AP018486_CDS_0009 N T V N R E -F T Q -A K A Q A Y K V A A -D K I -R E -T L -R D C C A L C N E -K G H -E A Q I -H F (113)
+ + + F
AcrIIC4 ----S K E L A E K ----F ---N -K E A -V N -E -A V E -K L Q K A I D L -A E K Q G I -Q -F
AP018486_CDS_0009 4 AcrIC3 0.55 View Alignment AP018486_CDS_0009 M A E I -T F --A ---D -F ----M E F A R E A G E V K L E L Q -D ---L R -T --E V R ---------I -(60)
M T + G VK + + V +
AcrIC3 M S I Q V T S T N G R T V N L -E I E L G S V V A S S G Q V K F M A D K T D R G -L E S R F L V P E A G N R R I E V A L
AP018486_CDS_0009 V -A -D -H L Q -A -M A D T Y V S E A Q T S T N T V N R E F T Q A K A Q -A Y K -V A A D K I R E T L R D C C A L C (120)
L S A + L
AcrIC3 -T -G -R D L -E -A A N A -L F S ------E ---------L A -A S V -E A T -N E M Y R E L D A ---E R
AP018486_CDS_0009 N E K G H E A Q I H F (131)
A
AcrIC3 A Q I N -K A L E -G
AP018486_CDS_0009 5 AcrIF3 0.54 View Alignment AP018486_CDS_0009 M A E I T F A D F ----M E F A R -E A ----G E V K ---------L ----E L -Q D -L R T E V R I V -A D (60)
M A ++ L L+ + + +
AcrIF3 M S S T I S D R I I S R S V I E A A R F -I Q S W E D A D P D N L T E S Q V L A A S S F -A A -R L H E G L Q A T V L Q
AP018486_CDS_0009 H L Q A M A D --------T Y V S E A Q T S T N -T V N R E F T Q A K A Q A Y K V A A D K I R E T L R -----D C (120)
+L + + A +A T+
AcrIF3 R L V D E S N R D E Y R E F Q A W E E A L L N A D G R V --T S N P F A D W G W W Y R I A N V M L A T A S Q N V G V A W
AP018486_CDS_0009 C A L C N E K ----G H -E ---A Q -I -H -F (146)
+
AcrIF3 G S H V H G R L M A I F Q D R F Q Q H Y E -D E E C
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;