y
Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g045344m |
Family | CBM43 |
Protein Properties | Length: 628 Molecular Weight: 67941.7 Isoelectric Point: 5.3396 |
Chromosome | Chromosome/Scaffold: 00207 Start: 121562 End: 123773 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 523 | 603 | 1.3e-21 |
WCVLDKGVTNFDLVDQQLFKACQEGDCTATEPGSSCSGLDNLTKVSYAFNMYFQMNQQVNKACDFEGLALITDKNASVGNC | |||
GH17 | 183 | 501 | 0 |
VGVNWGNLASHPLPAKIIVQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAIPNGMLFDMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLK SYNDSFVKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYPFLSLYESPDFPVEYAFFEEGA KGLQDKNHRYTNVLDGNYDTLLSALKKAGYPDMKIIIGEIGWPTDGHKAATSQSAQKFYDGLFKKLAKRDGTPLRPGTEFDVYLFGFLDEDAKSIAPGKF ERHWGIFRFDGQPKFPIDF |
Full Sequence |
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Protein Sequence Length: 628 Download |
QDDKNKDDGD NKDGNGSNNN GNGNDNNGNN NGNNGNNNGN NNNGNSNGNN GNNNSNGGNN 60 NGNNNNGNNN GDNGNGNNNN NNNGNNGNNN GNNGNNNGNN NGGNSSGNNN DNNNNGNNNN 120 NGDNSNNGNS NNNNNNDGNS NNGNNNNNGG NNNNNNNGNN NNGGNHNAKV DNFDYAHIKP 180 VDVGVNWGNL ASHPLPAKII VQMLKDNGIK RAKLFDADET SVKELAHTGI EVMVAIPNGM 240 LFDMAVDYSN AQNWVKENVT RWVKDGSVKL KYVAVGNEPF LKSYNDSFVK DTFPALKNVQ 300 QALVEAGHGK MVKATVPLNA DVYEGTLPSD GVFRKDIKQH IDNILKNLHD NKSPFIVNIY 360 PFLSLYESPD FPVEYAFFEE GAKGLQDKNH RYTNVLDGNY DTLLSALKKA GYPDMKIIIG 420 EIGWPTDGHK AATSQSAQKF YDGLFKKLAK RDGTPLRPGT EFDVYLFGFL DEDAKSIAPG 480 KFERHWGIFR FDGQPKFPID FTGRGQNKMP VGAKGVKYYD HKWCVLDKGV TNFDLVDQQL 540 FKACQEGDCT ATEPGSSCSG LDNLTKVSYA FNMYFQMNQQ VNKACDFEGL ALITDKNASV 600 GNCLFPIQID SAAMAATVAG ILLTILM* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 3.0e-12 | 522 | 591 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-24 | 522 | 605 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 5.0e-68 | 183 | 501 | 321 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACR38156.1 | 0 | 181 | 611 | 36 | 465 | unknown [Zea mays] |
RefSeq | NP_201284.1 | 0 | 184 | 611 | 29 | 457 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002275701.1 | 0 | 183 | 612 | 27 | 457 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002310612.1 | 0 | 183 | 626 | 32 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530257.1 | 0 | 183 | 611 | 29 | 457 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 9.99995e-41 | 183 | 501 | 3 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 3ur8_A | 9.99995e-41 | 183 | 501 | 3 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 3ur7_B | 9.99995e-41 | 183 | 501 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 9.99995e-41 | 183 | 501 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3f55_D | 2e-40 | 182 | 489 | 1 | 303 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO797198 | 436 | 183 | 614 | 0 |
AM721668 | 286 | 276 | 559 | 0 |
EX345626 | 309 | 266 | 570 | 0 |
GR410464 | 300 | 266 | 559 | 0 |
CA993350 | 302 | 312 | 609 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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