y
Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g011636m |
Family | CBM43 |
Protein Properties | Length: 481 Molecular Weight: 52395.5 Isoelectric Point: 7.4305 |
Chromosome | Chromosome/Scaffold: 00013 Start: 100855 End: 106722 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 365 | 446 | 1.8e-25 |
WCVMKPSARLDDPQVAPSVSYACGLADCTSLGYGTSCGNLDARGNISYAFNSYYQKNNQLDTACKFPNLSMITKADPSVGSC | |||
GH17 | 25 | 343 | 0 |
LGANWGTQASHPLPPETVVNLLRDNGFQKAKLFDADYGTLRALGKSGIEVMVGIPNDMLASLASSMKTAEKWVSQNVSQHIRKNNVNIRYVAVGNEPFLE TYNGSFLRTTFPALRNVQAALIKAGLSNQVKVTVPLNADVYESASGVPSGGDFRADIHDLMLAIVKFLSDNGGPFTVNIYPFISLYIDSNFPVEYAFFDG NSSPINDGGATYYNMFDANHDTLVRALQKNGYGNLPIIIGEIGWPTDGDRNANNEYARRFNQGFMSHISGGKGTPMRPGPIDAYLFSLIDEDAKSVDPGN FERHWGIFTYDGRPKYQLN |
Full Sequence |
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Protein Sequence Length: 481 Download |
MASFSVYASI KFLSLCAMIC GVSGLGANWG TQASHPLPPE TVVNLLRDNG FQKAKLFDAD 60 YGTLRALGKS GIEVMVGIPN DMLASLASSM KTAEKWVSQN VSQHIRKNNV NIRYVAVGNE 120 PFLETYNGSF LRTTFPALRN VQAALIKAGL SNQVKVTVPL NADVYESASG VPSGGDFRAD 180 IHDLMLAIVK FLSDNGGPFT VNIYPFISLY IDSNFPVEYA FFDGNSSPIN DGGATYYNMF 240 DANHDTLVRA LQKNGYGNLP IIIGEIGWPT DGDRNANNEY ARRFNQGFMS HISGGKGTPM 300 RPGPIDAYLF SLIDEDAKSV DPGNFERHWG IFTYDGRPKY QLNLGTTNSG SLVPARSVHY 360 LQKKWCVMKP SARLDDPQVA PSVSYACGLA DCTSLGYGTS CGNLDARGNI SYAFNSYYQK 420 NNQLDTACKF PNLSMITKAD PSVGSCIFQI TMEPYYGGAE RRIGSLRLVV GLFLFVLIIL 480 * 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 5.0e-6 | 257 | 335 | 79 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 5.0e-15 | 364 | 430 | 74 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-29 | 364 | 448 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 4.0e-77 | 25 | 343 | 322 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI38945.1 | 0 | 7 | 480 | 8 | 483 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273826.1 | 0 | 7 | 480 | 90 | 565 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309034.1 | 0 | 25 | 464 | 4 | 444 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331390.1 | 0 | 12 | 458 | 1 | 448 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530371.1 | 0 | 9 | 480 | 7 | 482 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 0 | 25 | 344 | 1 | 306 | A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of Halothermothrix Orenii |
PDB | 1aq0_B | 0 | 25 | 344 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 25 | 344 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 2cyg_A | 0 | 25 | 344 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_B | 0 | 25 | 344 | 3 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |