y
Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g011391m |
Family | CBM43 |
Protein Properties | Length: 488 Molecular Weight: 53300.1 Isoelectric Point: 8.4316 |
Chromosome | Chromosome/Scaffold: 00013 Start: 1166131 End: 1168228 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 364 | 445 | 2e-24 |
WCVMSPQASPSDPSVQESMTYACTYADCTSLGFGSSCGNLDPKKNASYTFNMYYQTMDQRKGTCSFNNRSVITTIDPSQGSC | |||
GH17 | 27 | 344 | 0 |
ACNWGLQSTHPLQANIVVKLMKDNGFNKVKLFEADPEALKALGKSGIQVMVGIPNDLLAPLASNVQAAVDWVQQNVSKYISQNGADIRYVAVGNEPFLKT YKDMFLHTTLPALQNIQAALIKAGLGQKVKVTVPLNADVYQSDSGLPSAGNFRADIHDLMISIIKFLRDNGGPLTINIYPFLSLYADPNFPIDFAFFNST AAPVVDGSITYTNVYDANFDTLISALEKNGFGSMPVIIGEVGWPTDGNSNANIEYARRFNQGLLDRILAGKGTPKRRTPPDVYLFSLIDEDNKSTLPGNF ERHWGIFNFDGSIKYQLK |
Full Sequence |
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Protein Sequence Length: 488 Download |
MGKHCFLYFF MLFLVSEGLT KGVAGLACNW GLQSTHPLQA NIVVKLMKDN GFNKVKLFEA 60 DPEALKALGK SGIQVMVGIP NDLLAPLASN VQAAVDWVQQ NVSKYISQNG ADIRYVAVGN 120 EPFLKTYKDM FLHTTLPALQ NIQAALIKAG LGQKVKVTVP LNADVYQSDS GLPSAGNFRA 180 DIHDLMISII KFLRDNGGPL TINIYPFLSL YADPNFPIDF AFFNSTAAPV VDGSITYTNV 240 YDANFDTLIS ALEKNGFGSM PVIIGEVGWP TDGNSNANIE YARRFNQGLL DRILAGKGTP 300 KRRTPPDVYL FSLIDEDNKS TLPGNFERHW GIFNFDGSIK YQLKIGGGKG LVPAKGVKYL 360 ARQWCVMSPQ ASPSDPSVQE SMTYACTYAD CTSLGFGSSC GNLDPKKNAS YTFNMYYQTM 420 DQRKGTCSFN NRSVITTIDP SQGSCRYEIM IDLGKHERPR NSSAGRRPNS LIAALIIAFM 480 LIICGGL* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 1.0e-5 | 258 | 336 | 83 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 5.0e-13 | 363 | 430 | 75 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-27 | 363 | 447 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 5.0e-76 | 26 | 344 | 321 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI27737.1 | 0 | 25 | 487 | 24 | 486 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197587.1 | 0 | 5 | 482 | 14 | 498 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002277217.1 | 0 | 27 | 487 | 18 | 478 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309443.1 | 0 | 25 | 449 | 1 | 425 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516181.1 | 0 | 1 | 487 | 16 | 502 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 0 | 30 | 333 | 5 | 294 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 1aq0_B | 0 | 30 | 333 | 5 | 294 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 30 | 333 | 5 | 294 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_D | 1.4013e-45 | 30 | 343 | 6 | 313 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_C | 1.4013e-45 | 30 | 343 | 6 | 313 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |