y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00050055m |
Family | GH116 |
Protein Properties | Length: 694 Molecular Weight: 77857.9 Isoelectric Point: 5.7882 |
Chromosome | Chromosome/Scaffold: 068966 Start: 199 End: 4733 |
Description | Beta-glucosidase, GBA2 type family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH116 | 277 | 638 | 0 |
GKFLYLEGIEYFMWCTYDVHFYASFALLDLFPKIELSIQRDFARAVLREDNSRVRFLADGAWGIRKVIGAVAHDLGAHNPWHELNAYNIHDTSRWKDLNP KFVLQIYRDFAATGNMSFGKDVWPAVCTAMEYMEQFDHDGDGMIENDGFPDQTYDAWTVLGVSAYCGCLWLAALQAAAALARSLGHDDYAERCMTRFAKA KSVFEAKLWNGSYFNYDSGTSYNSRSIQADQLAGQWYTASSGLPPLFEEDRIKCTLQKIFDYNVMRVKGGRMGAVNGMHPNGKVDETCMQSREIWTGVTY SLAATMLLHGMEHQAFTTAEGIYIAGWSEEGYGYWFQTPEAWTVDGHYRSLIYMRPLAIWAM |
Full Sequence |
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Protein Sequence Length: 694 Download |
LVNTGKERAK VSLLMTWANS IGGLSHHTGG HVNEPFIGEN GVSGVLLHHK TANNNPPVTF 60 AIAACENQNV NVTVLPVFGL SGESSVTARG MWGTMIQDGF FDRDNFNAGA SMPSSLGDTV 120 CAAVSASTWV EPHGRCTIVF AVAWSAPKVK FKKGSTYYRR YTKFYGTSPR SAVNLVQDAL 180 MKYKHWEEEI DKWQTPILRD ERLPEWYKIT LFNELYFLVA GGTIWIDSES LVVDADTKSN 240 SSPLEDSDSP LNDSTSNSTV PLIGFDPHEI DDKENVGKFL YLEGIEYFMW CTYDVHFYAS 300 FALLDLFPKI ELSIQRDFAR AVLREDNSRV RFLADGAWGI RKVIGAVAHD LGAHNPWHEL 360 NAYNIHDTSR WKDLNPKFVL QIYRDFAATG NMSFGKDVWP AVCTAMEYME QFDHDGDGMI 420 ENDGFPDQTY DAWTVLGVSA YCGCLWLAAL QAAAALARSL GHDDYAERCM TRFAKAKSVF 480 EAKLWNGSYF NYDSGTSYNS RSIQADQLAG QWYTASSGLP PLFEEDRIKC TLQKIFDYNV 540 MRVKGGRMGA VNGMHPNGKV DETCMQSREI WTGVTYSLAA TMLLHGMEHQ AFTTAEGIYI 600 AGWSEEGYGY WFQTPEAWTV DGHYRSLIYM RPLAIWAMKQ ALSPPMWILE APKVNTMDRA 660 HISPGTFQFL QDRVRKMTPK NGCFGNTVFN WDC* 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3408 | GDB1 | 0.0008 | 363 | 509 | 169 | + Glycogen debranching enzyme [Carbohydrate transport and metabolism] | ||
pfam12215 | GBA2_N | 2.0e-18 | 1 | 186 | 194 | + beta-Glucocerebrosidase 2 N terminal. This domain is found in bacteria, archaea and eukaryotes. This domain is typically between 320 to 354 amino acids in length. This domain is found associated with pfam04685. This domain is found in the protein beta-Glucocerebrosidase 2. It is found just after the extreme N terminus. This protein is located in the ER. The N terminal is thought to be the luminal domain while the C terminal is the cytosolic domain. The catalytic domain of GBA-2 is unknown. | ||
COG4354 | COG4354 | 8.0e-80 | 138 | 642 | 523 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
pfam04685 | DUF608 | 7.0e-156 | 277 | 640 | 368 | + Protein of unknown function, DUF608. This family represents a conserved region with a pankaryotic distribution in a number of uncharacterized proteins. |
Gene Ontology | |
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GO Term | Description |
GO:0004348 | glucosylceramidase activity |
GO:0006665 | sphingolipid metabolic process |
GO:0016021 | integral to membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC67156.1 | 0 | 1 | 693 | 236 | 974 | hypothetical protein OsI_34005 [Oryza sativa Indica Group] |
GenBank | EEC81952.1 | 0 | 1 | 693 | 170 | 850 | hypothetical protein OsI_25831 [Oryza sativa Indica Group] |
GenBank | EEE67087.1 | 0 | 1 | 693 | 170 | 838 | hypothetical protein OsJ_24071 [Oryza sativa Japonica Group] |
RefSeq | NP_001064833.1 | 0 | 1 | 693 | 236 | 974 | Os10g0473400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002489100.1 | 0 | 91 | 693 | 1 | 603 | hypothetical protein SORBIDRAFT_0073s002050 [Sorghum bicolor] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GT051521 | 332 | 329 | 660 | 0 |
GT032792 | 325 | 329 | 653 | 0 |
GT033883 | 334 | 217 | 550 | 0 |
GT051618 | 335 | 356 | 684 | 0 |
JG911986 | 282 | 326 | 607 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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