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Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr7g085390.1 |
Family | CBM43 |
Protein Properties | Length: 481 Molecular Weight: 52802.2 Isoelectric Point: 4.6223 |
Chromosome | Chromosome/Scaffold: 7 Start: 25652844 End: 25655656 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 368 | 449 | 9.4e-24 |
WCMFNPDAKDLSKLADNINFACTFGDCTALGYGSSCNNLDANGNASYAFNMYYQTQNQDRQACNFEGLAKPTTDNISTPTCN | |||
GH17 | 26 | 345 | 0 |
LGVNWGTQATHKLPPETVVKMLKDNGIQKVKLFDADDTTMTALAGSGIEVMVAIPNNQLAEMNDFKRAQYWVRKNVTRYNFDGGVKIKYVAVGNEPFLKA YNNSFLNITFPALQNIQNAINEAGLGDTVKATVPLNADVYMSPPDNQVPSAGIFRPDINGLMTQMVQFLNKNGAPFTVNIYPFLSLYGNDDFPFNFAFFD GVDKPITDNGIQYTNVFDANFDTLVSALKSIGFGDTPILVGEVGWPTEGDKNANSGNAIRFYNGLLSRLAANRGTPLRPGFIEVYLFGLIDEDAKSIAPG NFERHWGIFRYDGQPKFPMD |
Full Sequence |
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Protein Sequence Length: 481 Download |
MEKNWIFAML LMLGLMGCFC CYVEGLGVNW GTQATHKLPP ETVVKMLKDN GIQKVKLFDA 60 DDTTMTALAG SGIEVMVAIP NNQLAEMNDF KRAQYWVRKN VTRYNFDGGV KIKYVAVGNE 120 PFLKAYNNSF LNITFPALQN IQNAINEAGL GDTVKATVPL NADVYMSPPD NQVPSAGIFR 180 PDINGLMTQM VQFLNKNGAP FTVNIYPFLS LYGNDDFPFN FAFFDGVDKP ITDNGIQYTN 240 VFDANFDTLV SALKSIGFGD TPILVGEVGW PTEGDKNANS GNAIRFYNGL LSRLAANRGT 300 PLRPGFIEVY LFGLIDEDAK SIAPGNFERH WGIFRYDGQP KFPMDLSGQL QNKLLVGAQG 360 VKYLDPMWCM FNPDAKDLSK LADNINFACT FGDCTALGYG SSCNNLDANG NASYAFNMYY 420 QTQNQDRQAC NFEGLAKPTT DNISTPTCNF IIQIVPSSAS SLMPSFAALL FIAFSVILLA 480 * 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 3.0e-5 | 253 | 337 | 89 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 1.0e-17 | 368 | 436 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-29 | 368 | 450 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 3.0e-66 | 26 | 345 | 322 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ90287.1 | 0 | 23 | 479 | 25 | 480 | beta-1,3-glucanase, acidic [Coffea arabica] |
GenBank | ABN09816.1 | 0 | 1 | 459 | 1 | 459 | Glycoside hydrolase, family 17; X8 [Medicago truncatula] |
RefSeq | XP_002277003.1 | 0 | 1 | 454 | 2 | 453 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319699.1 | 0 | 23 | 479 | 20 | 478 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525445.1 | 0 | 20 | 470 | 19 | 469 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3f55_D | 0 | 26 | 347 | 2 | 316 | A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym: 1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase From Mycob Tuberculosis H3 |
PDB | 3f55_C | 0 | 26 | 347 | 2 | 316 | A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym: 1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase From Mycob Tuberculosis H3 |
PDB | 3f55_B | 0 | 26 | 347 | 2 | 316 | A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym: 1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase From Mycob Tuberculosis H3 |
PDB | 3f55_A | 0 | 26 | 347 | 2 | 316 | A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym: 1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase From Mycob Tuberculosis H3 |
PDB | 3em5_D | 0 | 26 | 347 | 2 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |