y
Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr2g027560.1 |
Family | CBM43 |
Protein Properties | Length: 490 Molecular Weight: 53141.9 Isoelectric Point: 5.6255 |
Chromosome | Chromosome/Scaffold: 2 Start: 8975368 End: 8978100 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 369 | 448 | 1.6e-23 |
WCVANPLSDLTNVVNHMKIACSVADCTTLNYGGSCNEIGEKGNISYAFNSFYQLRMQDSQSCEFDGLGMVTFLDPSVGDC | |||
GH17 | 28 | 348 | 0 |
IGVNWGTLSSHRLKPSTVVNLLRDNKISKVKLFEADPAILKALMGSAIQVMVGIPNEMLSLLGGSSVAADYWVQRNVSAFMTKGGADIRYIAVGNEPFLT SYNGQFINLVIPAITNIQQSLVKANLAGYVKIVVPCNADAYESSGGLPSQGVFRSELTQIITQLVQFLNSNGSPFVVNIYPFLSLYDNGDFPGDYAFFQG TTHAVTDGSNVYTNAFDGNYDTLVSALGKLGYGQMPIVIGEIGWPSDGAIGANITAARVFNQGLVYHIASNKGTPLRPNVPPMDVYLFGLFDEGAKSTLP GNFERHWGIFSFDGQAKYSLN |
Full Sequence |
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Protein Sequence Length: 490 Download |
MLQPTLTLLF SLLFLCCLSL PMASESAIGV NWGTLSSHRL KPSTVVNLLR DNKISKVKLF 60 EADPAILKAL MGSAIQVMVG IPNEMLSLLG GSSVAADYWV QRNVSAFMTK GGADIRYIAV 120 GNEPFLTSYN GQFINLVIPA ITNIQQSLVK ANLAGYVKIV VPCNADAYES SGGLPSQGVF 180 RSELTQIITQ LVQFLNSNGS PFVVNIYPFL SLYDNGDFPG DYAFFQGTTH AVTDGSNVYT 240 NAFDGNYDTL VSALGKLGYG QMPIVIGEIG WPSDGAIGAN ITAARVFNQG LVYHIASNKG 300 TPLRPNVPPM DVYLFGLFDE GAKSTLPGNF ERHWGIFSFD GQAKYSLNLG LGNKELRNAR 360 NVEYLPSRWC VANPLSDLTN VVNHMKIACS VADCTTLNYG GSCNEIGEKG NISYAFNSFY 420 QLRMQDSQSC EFDGLGMVTF LDPSVGDCHF LVGVIDRGLN KDSSACQKTY QWLVIVLLLI 480 LHGTFFLSM* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.0001 | 167 | 340 | 199 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 4.0e-13 | 368 | 437 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 6.0e-26 | 369 | 450 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 9.0e-80 | 28 | 348 | 322 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN08871.1 | 0 | 22 | 489 | 1 | 468 | Glycoside hydrolase, family 17; X8 [Medicago truncatula] |
EMBL | CAB10499.1 | 0 | 11 | 480 | 35 | 497 | glucanase like protein [Arabidopsis thaliana] |
RefSeq | NP_193451.2 | 0 | 11 | 480 | 8 | 470 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002329964.1 | 0 | 2 | 489 | 4 | 484 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525026.1 | 0 | 10 | 475 | 8 | 467 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3f55_D | 0 | 28 | 349 | 2 | 315 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 3f55_C | 0 | 28 | 349 | 2 | 315 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 3f55_B | 0 | 28 | 349 | 2 | 315 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 3f55_A | 0 | 28 | 349 | 2 | 315 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 3em5_D | 0 | 28 | 349 | 2 | 315 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |