y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000245023 |
Family | CBM43 |
Protein Properties | Length: 470 Molecular Weight: 52305.8 Isoelectric Point: 8.7179 |
Chromosome | Chromosome/Scaffold: 020254241 Start: 4223 End: 5739 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 356 | 435 | 3e-21 |
WCVLNSDVRNLSRALAEFNYACSQADCTSLGGKRSCDLEMHDRISFAFNEFYQKGDQDYRKCDFSGMGTKVTRDPSKGDC | |||
GH17 | 15 | 332 | 0 |
GVNWGQMSSHPLPPNNVVKMLKDNGIKKVKLFDADPTTMKALSGTGIDVMVGIPNEKLNKIAHDYATARKWVKQNVTAYLHDGGVTISYVAVGNEPFLTG YNGTFVKDVYPSVKNVQKALDEAGVGGKIKCVVPFNADVYESPSNKPSDGRFRKDIKKSMSQILEFLRTHKSPFVVNIYPFLSLSLSSGFPKEFAFFDGG GKPVRDNGAQYSNVFDANYDTLLWALKKAGVPNLDIVIGEVGWPTDGHDYGNSRLAKKFYDGLLKKLASQVGTPLRKGYLEVYLFGLFDEDEKSIAPGDF ERHWGIFRYDGKPKFPMD |
Full Sequence |
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Protein Sequence Length: 470 Download |
MLGIWVDLDL VQGFGVNWGQ MSSHPLPPNN VVKMLKDNGI KKVKLFDADP TTMKALSGTG 60 IDVMVGIPNE KLNKIAHDYA TARKWVKQNV TAYLHDGGVT ISYVAVGNEP FLTGYNGTFV 120 KDVYPSVKNV QKALDEAGVG GKIKCVVPFN ADVYESPSNK PSDGRFRKDI KKSMSQILEF 180 LRTHKSPFVV NIYPFLSLSL SSGFPKEFAF FDGGGKPVRD NGAQYSNVFD ANYDTLLWAL 240 KKAGVPNLDI VIGEVGWPTD GHDYGNSRLA KKFYDGLLKK LASQVGTPLR KGYLEVYLFG 300 LFDEDEKSIA PGDFERHWGI FRYDGKPKFP MDLSGQASGH QMLKGVEGVK YLQKQWCVLN 360 SDVRNLSRAL AEFNYACSQA DCTSLGGKRS CDLEMHDRIS FAFNEFYQKG DQDYRKCDFS 420 GMGTKVTRDP SKGDCLFRIQ IDLLSAAGQR HALSYAYASL LFVIAFFTLF 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 8.0e-8 | 208 | 324 | 117 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 6.0e-11 | 355 | 424 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-22 | 355 | 437 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 5.0e-72 | 15 | 332 | 323 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN62816.1 | 0 | 13 | 450 | 26 | 460 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_201284.1 | 0 | 10 | 441 | 24 | 455 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002275701.1 | 0 | 13 | 450 | 26 | 460 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002310612.1 | 0 | 10 | 470 | 28 | 485 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530257.1 | 0 | 10 | 441 | 25 | 455 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 12 | 334 | 1 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur8_A | 0 | 12 | 334 | 1 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_B | 0 | 12 | 334 | 1 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 12 | 334 | 1 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 4gzj_A | 0 | 12 | 334 | 1 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO797198 | 436 | 13 | 446 | 0 |
GE474080 | 296 | 42 | 337 | 0 |
AM721668 | 287 | 107 | 392 | 0 |
CF207401 | 266 | 16 | 281 | 0 |
EX345626 | 313 | 93 | 402 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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