y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000166129 |
Family | PL1 |
Protein Properties | Length: 189 Molecular Weight: 21451.5 Isoelectric Point: 10.3583 |
Chromosome | Chromosome/Scaffold: 003598478 Start: 6 End: 806 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 2 | 105 | 1.50001e-40 |
EMSQCEDGLLDVTRGSTDITISNNWFRDQDKVMLLGHDDGYVRDKNMRVTLVYNHFGPNCNQRMPRIRYGYAHVVNNLYRKWSQYAIGGSMNPSVKSEAN LFIA |
Full Sequence |
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Protein Sequence Length: 189 Download |
MEMSQCEDGL LDVTRGSTDI TISNNWFRDQ DKVMLLGHDD GYVRDKNMRV TLVYNHFGPN 60 CNQRMPRIRY GYAHVVNNLY RKWSQYAIGG SMNPSVKSEA NLFIAPKRGN KEVTWRKVSN 120 SIGSKSSWKF RSVGDIFENE ASFLQTSLPV AGVMPQYKRI QSFLVAHAKA VRSLTRSSGA 180 LKCTKTSRC 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 7.0e-21 | 8 | 103 | 99 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-39 | 7 | 103 | 97 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-44 | 8 | 107 | 100 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD01325.1 | 0 | 3 | 189 | 195 | 384 | putative Cup s 1 pollen allergen [Oryza sativa Japonica Group] |
EMBL | CBI26401.1 | 0 | 3 | 189 | 138 | 320 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002267384.1 | 0 | 3 | 189 | 187 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
RefSeq | XP_002299118.1 | 0 | 6 | 189 | 172 | 354 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002304865.1 | 0 | 3 | 189 | 169 | 352 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 3 | 181 | 168 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 3 | 181 | 168 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1jta_A | 0.0000000000001 | 7 | 147 | 183 | 319 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1jrg_B | 0.0000000000001 | 7 | 147 | 183 | 319 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
PDB | 1jrg_A | 0.0000000000001 | 7 | 147 | 183 | 319 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DT575750 | 182 | 3 | 184 | 0 |
FG478648 | 189 | 3 | 189 | 0 |
FG474249 | 186 | 3 | 188 | 0 |
FG468635 | 160 | 3 | 162 | 0 |
FG468822 | 155 | 3 | 157 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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