y
Basic Information | |
---|---|
Species | Linum usitatissimum |
Cazyme ID | Lus10014507 |
Family | GH38 |
Protein Properties | Length: 1182 Molecular Weight: 134436 Isoelectric Point: 6.5551 |
Chromosome | Chromosome/Scaffold: 107 Start: 57699 End: 61877 |
Description | golgi alpha-mannosidase II |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH38 | 227 | 527 | 0 |
DARRKFIWEEISYLEKWWRDASEENRASFTKLVKNGQLEVVGGGWVMNDEANSHFFSIIEQITEGNMWLNDTIGVIPKNSWAIDPFGYSSTMAYLLRRMG FENMLIQRTHYELKKELALHKKLEFVWRQSWDARETTDIFVHMMPFYSYDVPHTCGPEPAICCQFDFARVPGFFYELCPWRQNPEDITPENVNERTQLLL DQYRKKSILYRTNTLLIPLGDDFRYVSVDEAEAQFHNYQLLFDHINSNPSLNAEAKFGTLDDYFQALREESARINYSLPGEVGSSQIGGFPSLSGDFFTY A |
Full Sequence |
---|
Protein Sequence Length: 1182 Download |
MPLSSYTGSR RGGGGASGSV WSQSILPTSS SSKSKLPSRK PRKRGALISF LFANFFVISL 60 SISLLFLFVT ILHFGFPNPF FFSSSTFNSG HSPPVPFSRR RNHPTENDVT KGATVDLTTK 120 DLYDKIDFLD EDGGTWKQGW KVSYRGDEWD NEKLKVFVVP HSHNDPGWKL TVDEYYEKQS 180 RLILDTIVET LSKFESVMRA WFLLAFILCG VSLKRKPGGF KGNFCTDARR KFIWEEISYL 240 EKWWRDASEE NRASFTKLVK NGQLEVVGGG WVMNDEANSH FFSIIEQITE GNMWLNDTIG 300 VIPKNSWAID PFGYSSTMAY LLRRMGFENM LIQRTHYELK KELALHKKLE FVWRQSWDAR 360 ETTDIFVHMM PFYSYDVPHT CGPEPAICCQ FDFARVPGFF YELCPWRQNP EDITPENVNE 420 RTQLLLDQYR KKSILYRTNT LLIPLGDDFR YVSVDEAEAQ FHNYQLLFDH INSNPSLNAE 480 AKFGTLDDYF QALREESARI NYSLPGEVGS SQIGGFPSLS GDFFTYADRE KDYWSGYYVS 540 VGHCQRNQCE KLVTGFSYKL TAARRNLALF QHHDGVTGTA KDHVVQDYGI RMHTSLEDLQ 600 IFMSKAIEVL LGMHLEKLDL NPAKFEADQG WAENNRQPAH KALSPREGTA QSVVLFNLTE 660 QTREEIVMVV VNRPYVTVLD SNWTCVQSQV SPELKHDSSN VFSGRHRVHW KASVPPMGLE 720 TYYISNGFVG CETAKPAKLK YFSSTSFSCP KPYACSKLEG DSAEIHNQQQ ILSFDLKEGL 780 LQKIRHSNGS TYVVAEEIGM YASNGSGAYL FRPLGDAQSI IQTNGLTVIT EGPLMEELFS 840 YPKTPYKKNP VSHSTRLYNG ANTIQELVVE TEYHVELIGK EFDDCELIVR YKTDIDSRRI 900 FYTDLNGFQI SRRETYDKIP LQGNYYPMPS LAFLQGSNGQ RFSVHSRQSL GVASLEDGWL 960 EIMVDRRLPT DDGRGLGQGV TDNRPMNVIF HLLLESNISS ESKPVSNHLP LTPSLLSHRV 1020 GEHLNYPLHA FISKESEELS LQTHGRSFSP LYASLPCDLH IVNFKVARPA LFSRDLVGDS 1080 RFVSDARFVL ILQRWHSDAS YCQKGQSQQC TRFDNDGSLN IFEMFHGFSI SKAEATSLNL 1140 VHDDVEMLGY SEHVGDLSRD GRVSISPMEI QAYRLELLPN R* 1200 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00451 | GH38N_AMII_euk | 2.0e-94 | 154 | 473 | 321 | + N-terminal catalytic domain of eukaryotic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38). The family corresponds to a group of eukaryotic class II alpha-mannosidases (AlphaMII), which contain Golgi alpha-mannosidases II (GMII), the major broad specificity lysosomal alpha-mannosidases (LAM, MAN2B1), the noval core-specific lysosomal alpha 1,6-mannosidases (Epman, MAN2B2), and similar proteins. GMII catalyzes the hydrolysis of the terminal both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2 (GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. LAM is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. Different from LAM, Epman can efficiently cleave only the alpha 1,6-linked mannose residue from (Man)3GlcNAc, but not (Man)3(GlcNAc)2 or other larger high mannose oligosaccharides, in the core of N-linked glycans. Members in this family are retaining glycosyl hydrolases of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. | ||
cd11667 | GH38N_Man2A2 | 9.0e-145 | 154 | 538 | 385 | + N-terminal catalytic domain of Golgi alpha-mannosidase IIx, and similar proteins; glycoside hydrolase family 38 (GH38). This subfamily is represented by human alpha-mannosidase 2x (MX, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A2). MX is enzymatically and functionally very similar to GMII (found in another subfamily), and as an isoenzyme of GMII. It is thought to also function in the N-glycosylation pathway. MX specifically hydrolyzes the same oligosaccharide substrate as does MII. It specifically removes two mannosyl residues from GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine). | ||
cd11666 | GH38N_Man2A1 | 1.0e-147 | 154 | 538 | 385 | + N-terminal catalytic domain of Golgi alpha-mannosidase II and similar proteins; glycoside hydrolase family 38 (GH38). This subfamily is represented by Golgi alpha-mannosidase II (GMII, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A1), a monomeric, membrane-anchored class II alpha-mannosidase existing in the Golgi apparatus of eukaryotes. GMII plays a key role in the N-glycosylation pathway. It catalyzes the hydrolysis of the terminal of both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. GMII is activated by zinc or cobalt ions and is strongly inhibited by swainsonine. Inhibition of GMII provides a route to block cancer-induced changes in cell surface oligosaccharide structures. GMII has a pH optimum of 5.5-6.0, which is intermediate between those of acidic (lysosomal alpha-mannosidase) and neutral (ER/cytosolic alpha-mannosidase) enzymes. GMII is a retaining glycosyl hydrolase of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. | ||
PLN02701 | PLN02701 | 0 | 115 | 1177 | 1091 | + alpha-mannosidase | ||
cd10809 | GH38N_AMII_GMII_SfManIII_like | 0 | 153 | 538 | 386 | + N-terminal catalytic domain of Golgi alpha-mannosidase II, Spodoptera frugiperda Sf9 alpha-mannosidase III, and similar proteins; glycoside hydrolase family 38 (GH38). This subfamily is represented by Golgi alpha-mannosidase II (GMII, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A1), a monomeric, membrane-anchored class II alpha-mannosidase existing in the Golgi apparatus of eukaryotes. GMII plays a key role in the N-glycosylation pathway. It catalyzes the hydrolysis of the terminal both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. GMII is activated by zinc or cobalt ions and is strongly inhibited by swainsonine. Inhibition of GMII provides a route to block cancer-induced changes in cell surface oligosaccharide structures. GMII has a pH optimum of 5.5-6.0, which is intermediate between those of acidic (lysosomal alpha-mannosidase) and neutral (ER/cytosolic alpha-mannosidase) enzymes. GMII is a retaining glycosyl hydrolase of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. This subfamily also includes human alpha-mannosidase 2x (MX, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A2). MX is enzymatically and functionally very similar to GMII, and is thought to also function in the N-glycosylation pathway. Also found in this subfamily is class II alpha-mannosidase encoded by Spodoptera frugiperda Sf9 cell. This alpha-mannosidase is an integral membrane glycoprotein localized in the Golgi apparatus. It shows high sequence homology with mammalian Golgi alpha-mannosidase II(GMII). It can hydrolyze p-nitrophenyl alpha-D-mannopyranoside (pNP-alpha-Man), and it is inhibited by swainsonine. However, the Sf9 enzyme is stimulated by cobalt and can hydrolyze (Man)5(GlcNAc)2 to (Man)3(GlcNAc)2, but it cannot hydrolyze GlcNAc(Man)5(GlcNAc)2, which is distinct from that of GMII. Thus, this enzyme has been designated as Sf9 alpha-mannosidase III (SfManIII). It probably functions in an alternate N-glycan processing pathway in Sf9 cells. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0004559 | alpha-mannosidase activity |
GO:0005975 | carbohydrate metabolic process |
GO:0006013 | mannose metabolic process |
GO:0008270 | zinc ion binding |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI35021.1 | 0 | 9 | 1179 | 5 | 1056 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_196999.1 | 0 | 1 | 1181 | 1 | 1173 | GMII (GOLGI ALPHA-MANNOSIDASE II); alpha-mannosidase [Arabidopsis thaliana] |
RefSeq | XP_002276468.1 | 0 | 9 | 1179 | 5 | 1149 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002438145.1 | 0 | 109 | 1179 | 122 | 1178 | hypothetical protein SORBIDRAFT_10g008770 [Sorghum bicolor] |
RefSeq | XP_002517418.1 | 0 | 1 | 1181 | 1 | 1180 | mannosidase alpha class 2a, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ps3_A | 0 | 93 | 1042 | 18 | 943 | A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine |
PDB | 3eju_A | 0 | 87 | 1042 | 12 | 943 | A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine |
PDB | 3ejt_A | 0 | 87 | 1042 | 12 | 943 | A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine |
PDB | 3ejs_A | 0 | 87 | 1042 | 12 | 943 | A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine |
PDB | 3ejr_A | 0 | 87 | 1042 | 12 | 943 | A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine |