y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.010G001000.1 |
Family | GH13 |
Protein Properties | Length: 412 Molecular Weight: 46746.3 Isoelectric Point: 6.4557 |
Chromosome | Chromosome/Scaffold: 10 Start: 38932 End: 43102 |
Description | alpha-amylase-like 2 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH13 | 43 | 329 | 5.6e-32 |
EKKVPDIAKSGFTSVWLPPAINSFSPDGYLPQNLYLLSSSYGSEQQLKALLQKLSEYKVRAMADIVINHRIGTTQGHGGLYNRYDGIPLAWDEHAVTSCT GGLGNQSTGDNFHGVPNIDHSQHFVRKDIIGWLQWLLCVGFQDFRFDFARGYSAKYVKEYIEAAKPIFSVGEYWDSCNYSGSVLEYNQDSHRQRIINWID ATGQLSSAFDFTTKGILQEAVKGQFWRLRDPQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWPFPSNHIMEGYAYILTHPGTPTVFY |
Full Sequence |
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Protein Sequence Length: 412 Download |
MDNLNNTVEE STDLGAVLRK GKEILLQGFN WESHKYDWWE NLEKKVPDIA KSGFTSVWLP 60 PAINSFSPDG YLPQNLYLLS SSYGSEQQLK ALLQKLSEYK VRAMADIVIN HRIGTTQGHG 120 GLYNRYDGIP LAWDEHAVTS CTGGLGNQST GDNFHGVPNI DHSQHFVRKD IIGWLQWLLC 180 VGFQDFRFDF ARGYSAKYVK EYIEAAKPIF SVGEYWDSCN YSGSVLEYNQ DSHRQRIINW 240 IDATGQLSSA FDFTTKGILQ EAVKGQFWRL RDPQGKPPGV MGWWPSRAVT FIDNHDTGST 300 QAHWPFPSNH IMEGYAYILT HPGTPTVFYD HFYDGDDSGH EQIVKLMEIR RSGEIHSRSS 360 VRILEAKDNL YSAVIGDKIC IKIGDGSWSP SDREWTLATS GQRYAIWQKK Q* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK09441 | PRK09441 | 2.0e-40 | 21 | 352 | 418 | + cytoplasmic alpha-amylase; Reviewed | ||
PLN00196 | PLN00196 | 3.0e-124 | 23 | 373 | 368 | + alpha-amylase; Provisional | ||
PLN02784 | PLN02784 | 2.0e-153 | 21 | 410 | 398 | + alpha-amylase | ||
cd11314 | AmyAc_arch_bac_plant_AmyA | 3.0e-154 | 24 | 361 | 343 | + Alpha amylase catalytic domain found in archaeal, bacterial, and plant Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes AmyA from bacteria, archaea, water fleas, and plants. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. | ||
PLN02361 | PLN02361 | 0 | 12 | 409 | 401 | + alpha-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0003824 | catalytic activity |
GO:0004556 | alpha-amylase activity |
GO:0005509 | calcium ion binding |
GO:0005975 | carbohydrate metabolic process |
GO:0043169 | cation binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33234.1 | 0 | 10 | 409 | 14 | 414 | cytosolic alpha-amylase [Malus x domestica] |
EMBL | CBI18895.1 | 0 | 1 | 409 | 1 | 411 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002284805.1 | 0 | 6 | 409 | 51 | 459 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301935.1 | 0 | 9 | 409 | 5 | 406 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002510621.1 | 0 | 15 | 409 | 3 | 398 | alpha-amylase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bg9_A | 0 | 23 | 409 | 1 | 402 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 1ava_B | 0 | 23 | 409 | 1 | 402 | A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed |
PDB | 1ava_A | 0 | 23 | 409 | 1 | 402 | A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed |
PDB | 1amy_A | 0 | 23 | 409 | 1 | 402 | A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed |
PDB | 3bsg_A | 0 | 23 | 409 | 2 | 404 | A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO780661 | 410 | 1 | 409 | 0 |
HO798064 | 360 | 16 | 374 | 0 |
BU103706 | 404 | 9 | 409 | 0 |
CO094547 | 278 | 80 | 357 | 0 |
HO798064 | 23 | 387 | 409 | 0.47 |
Sequence Alignments (This image is cropped. Click for full image.) |
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