y
Basic Information | |
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Species | Zea mays |
Cazyme ID | GRMZM2G450771_T01 |
Family | PL4 |
Protein Properties | Length: 684 Molecular Weight: 73658.1 Isoelectric Point: 7.2389 |
Chromosome | Chromosome/Scaffold: 4 Start: 186142723 End: 186147554 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 37 | 661 | 0 |
HGVTVTVDNGVVQVTLSTPQGHIISVRYNGGQQNLLYYYTRGGNTGGYWDVFWDYPGSGRRPGMIDMLDGSELRVVSSSEEKVELSFRSDYNPSLPNSVR LNIDKRFVMLRGSSGFYCYAILEHASGYPALSVAEARIAFKLNAAMFSYMAISDDIQRYMPSEADRVAPRGAPLAYKEAVLLVDPVEPQFRGEVDDKYQY SLDNRDNAVHGWISGGRTGTTTSPAVGFWVITPSNEFKSGGPMKRELTSHVGPTSMAVFLGKHYTGNDIMLSLGDGEYWKKVLGPVFIYLNSKSNPGGGG EGDLRALWDDAKAQARAEAGKWPYSFPESPDYAKAGDRGTVTGTLLVRDAFGSNGGGGGTDVPAAAAFVGLAAPGGQPGSWATQCKGYQFWTRAAADGRF SIAGVRAGTRYGLYAWVPGFLGDYAHASTVAVAPGGAVDLGSLLFAPPRSGPTLWEMGVPDRTAAEFFVPDADPRYASKLFLGEHKYRQYGLWERYAELH PAGSDLVFTVGQSDYSKNWFFAHVTRMVGNVSTPTTRQIRFSLDHVVANGTYTLRIALAAAQMSRLMVRVNGRASREAVFRTPEFGDGNAIARHGIHGGV QWIFEFPIRGYLLRGGENSISITQT |
Full Sequence |
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Protein Sequence Length: 684 Download |
MAGAAVILLV AVGAATVLHL AAAAAVVVPP PDDAGQHGVT VTVDNGVVQV TLSTPQGHII 60 SVRYNGGQQN LLYYYTRGGN TGGYWDVFWD YPGSGRRPGM IDMLDGSELR VVSSSEEKVE 120 LSFRSDYNPS LPNSVRLNID KRFVMLRGSS GFYCYAILEH ASGYPALSVA EARIAFKLNA 180 AMFSYMAISD DIQRYMPSEA DRVAPRGAPL AYKEAVLLVD PVEPQFRGEV DDKYQYSLDN 240 RDNAVHGWIS GGRTGTTTSP AVGFWVITPS NEFKSGGPMK RELTSHVGPT SMAVFLGKHY 300 TGNDIMLSLG DGEYWKKVLG PVFIYLNSKS NPGGGGEGDL RALWDDAKAQ ARAEAGKWPY 360 SFPESPDYAK AGDRGTVTGT LLVRDAFGSN GGGGGTDVPA AAAFVGLAAP GGQPGSWATQ 420 CKGYQFWTRA AADGRFSIAG VRAGTRYGLY AWVPGFLGDY AHASTVAVAP GGAVDLGSLL 480 FAPPRSGPTL WEMGVPDRTA AEFFVPDADP RYASKLFLGE HKYRQYGLWE RYAELHPAGS 540 DLVFTVGQSD YSKNWFFAHV TRMVGNVSTP TTRQIRFSLD HVVANGTYTL RIALAAAQMS 600 RLMVRVNGRA SREAVFRTPE FGDGNAIARH GIHGGVQWIF EFPIRGYLLR GGENSISITQ 660 TMAFGPFLGV MYDYIRMEGP PPA* 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 2.0e-19 | 373 | 479 | 107 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 2.0e-41 | 491 | 678 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 2.0e-49 | 137 | 333 | 197 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 5.0e-62 | 52 | 230 | 179 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA96404.1 | 0 | 41 | 680 | 57 | 689 | LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] |
DDBJ | BAF29096.2 | 0 | 41 | 680 | 57 | 689 | Os12g0131900 [Oryza sativa Japonica Group] |
RefSeq | NP_001066077.1 | 0 | 41 | 680 | 57 | 676 | Os12g0131900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002441731.1 | 0 | 1 | 681 | 12 | 713 | hypothetical protein SORBIDRAFT_08g001440 [Sorghum bicolor] |
RefSeq | XP_002450207.1 | 0 | 84 | 682 | 127 | 679 | hypothetical protein SORBIDRAFT_05g001980 [Sorghum bicolor] |