y
Basic Information | |
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Species | Zea mays |
Cazyme ID | GRMZM2G175698_T01 |
Family | PL4 |
Protein Properties | Length: 637 Molecular Weight: 70331.2 Isoelectric Point: 6.6793 |
Chromosome | Chromosome/Scaffold: 5 Start: 111537549 End: 111540965 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 6 | 602 | 0 |
DSTEFKVVVSSEDQVELSFSSAYTPSSPTSVHLHVDKRLVVLKGSSGFYCYAILEHARDWPALNVTEARLAFKLNTDAFKYMAVSDDIQRYMPSAADRAE PRGAPLAYKEAVLLVNPQEPRFRGEVDDKYQYSMDNKDSTVHGWTTAGGVERSPNDNPVVGFWVITPSNEFKSGGPTKRELTSHVGPTTLTVRLLLLYLQ IEHAGDELYTACVCVCMSQMFLGTHYVGNDIVLSISGGEYWKKVMGPVFVYLNSRPRRGGIGGCDHSRALWADAKAQARAEAGKWPYSFPKSPDFAKAGE RGGVTGRLLVRDDDRFTTDDDNNDAAAAPMPVGTEAYVGLAAPGQAGSWVTECKGYQFWTATTATEDGFVFTIANVREGVYSLYAWVPGVLGEYVHASPV TVAVGGAVVDLGDLVFRPPRSGPTLWEIGVPDRKAAEFFVPDVDPRFANRLFLHKDRYRQYGLWARYAELYPDGDPVFTVGRSEPWKDWFFAHVTRKVGE GRYAPTTREIRFRLYRVVADGTYTLRVSLAAAHMSRLQVRVNGRGGGGAAELTTPEFGGGNAIARHGIHGVQWNFQFPIRGYLLREGDNSVSITQTR |
Full Sequence |
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Protein Sequence Length: 637 Download |
MMDTLDSTEF KVVVSSEDQV ELSFSSAYTP SSPTSVHLHV DKRLVVLKGS SGFYCYAILE 60 HARDWPALNV TEARLAFKLN TDAFKYMAVS DDIQRYMPSA ADRAEPRGAP LAYKEAVLLV 120 NPQEPRFRGE VDDKYQYSMD NKDSTVHGWT TAGGVERSPN DNPVVGFWVI TPSNEFKSGG 180 PTKRELTSHV GPTTLTVRLL LLYLQIEHAG DELYTACVCV CMSQMFLGTH YVGNDIVLSI 240 SGGEYWKKVM GPVFVYLNSR PRRGGIGGCD HSRALWADAK AQARAEAGKW PYSFPKSPDF 300 AKAGERGGVT GRLLVRDDDR FTTDDDNNDA AAAPMPVGTE AYVGLAAPGQ AGSWVTECKG 360 YQFWTATTAT EDGFVFTIAN VREGVYSLYA WVPGVLGEYV HASPVTVAVG GAVVDLGDLV 420 FRPPRSGPTL WEIGVPDRKA AEFFVPDVDP RFANRLFLHK DRYRQYGLWA RYAELYPDGD 480 PVFTVGRSEP WKDWFFAHVT RKVGEGRYAP TTREIRFRLY RVVADGTYTL RVSLAAAHMS 540 RLQVRVNGRG GGGAAELTTP EFGGGNAIAR HGIHGVQWNF QFPIRGYLLR EGDNSVSITQ 600 TRADGEFLGV LYDYVRLEAP PAHCRDPTAT ATTWRT* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 7.0e-17 | 305 | 403 | 99 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 9.0e-44 | 431 | 618 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 6.0e-47 | 6 | 259 | 254 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 8.0e-62 | 3 | 131 | 129 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA96404.1 | 0 | 1 | 630 | 114 | 699 | LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] |
DDBJ | BAF29096.2 | 0 | 1 | 620 | 114 | 689 | Os12g0131900 [Oryza sativa Japonica Group] |
RefSeq | NP_001066077.1 | 0 | 1 | 630 | 114 | 686 | Os12g0131900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001152385.1 | 0 | 1 | 636 | 117 | 724 | lyase [Zea mays] |
RefSeq | XP_002441731.1 | 0 | 1 | 627 | 132 | 719 | hypothetical protein SORBIDRAFT_08g001440 [Sorghum bicolor] |