y
Basic Information | |
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Species | Zea mays |
Cazyme ID | GRMZM2G154124_T01 |
Family | PL4 |
Protein Properties | Length: 647 Molecular Weight: 73629.7 Isoelectric Point: 4.642 |
Chromosome | Chromosome/Scaffold: 1 Start: 206155710 End: 206160274 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 11 | 629 | 0 |
CATAGVTVKVSDRYVEIKNGIFDLTLSNPDGIVTGVRYNGVDNLMEILNKEDNRGYWDLVWNPPGQKTGIFDVIKGTEFRIVYQDENQAEVSFTRNWDPS LEGKAVPLNIDKRFIVLRGSSGFYTYGIYEHKEGWPDFGLGETRVAFKLRKDMFHYMALADDRQRIMPMPDDRLPPRGQPLAYPEAVLLVDPINPELRGE VDDKYQYSCEDQYNNVHGWMSFDPPIGFWQITPSDEFRTGGPLKQNLTSHVGPTMLAMFLSAHYAGDDLSPKFTNGEYWKKVHGPVFMYLNSSWDASDPT MLWEDAKVQMMIEKGNWPYCFALSEDFQKTEQRGCVSGRLLVRDRYIDDQDLYASGAYVGLALPGEAGSWQRECKGYQFWCRADVDGSFYIRNIVTGNYN LYAWVPGFLGDYKLDATVTIASGDDIYLGDLVYEPPRDGPTMWEIGVPDRSAAEFYVPDPNPNYVNRLYVNHPADRFRQYGLWERYAELYPDSDLVYTVG QSDYSTDWFYAQVNRKIDDNTYQPTTWQIKFDLDSVSPSSTYKFRVALASSALAELQISFNDQDRAVPHFATGLIGRDNAIARHGIHGLYWLFNIDVASA WLVQGVNTIYLKQPRSQSP |
Full Sequence |
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Protein Sequence Length: 647 Download |
MGPPRPASPA CATAGVTVKV SDRYVEIKNG IFDLTLSNPD GIVTGVRYNG VDNLMEILNK 60 EDNRGYWDLV WNPPGQKTGI FDVIKGTEFR IVYQDENQAE VSFTRNWDPS LEGKAVPLNI 120 DKRFIVLRGS SGFYTYGIYE HKEGWPDFGL GETRVAFKLR KDMFHYMALA DDRQRIMPMP 180 DDRLPPRGQP LAYPEAVLLV DPINPELRGE VDDKYQYSCE DQYNNVHGWM SFDPPIGFWQ 240 ITPSDEFRTG GPLKQNLTSH VGPTMLAMFL SAHYAGDDLS PKFTNGEYWK KVHGPVFMYL 300 NSSWDASDPT MLWEDAKVQM MIEKGNWPYC FALSEDFQKT EQRGCVSGRL LVRDRYIDDQ 360 DLYASGAYVG LALPGEAGSW QRECKGYQFW CRADVDGSFY IRNIVTGNYN LYAWVPGFLG 420 DYKLDATVTI ASGDDIYLGD LVYEPPRDGP TMWEIGVPDR SAAEFYVPDP NPNYVNRLYV 480 NHPADRFRQY GLWERYAELY PDSDLVYTVG QSDYSTDWFY AQVNRKIDDN TYQPTTWQIK 540 FDLDSVSPSS TYKFRVALAS SALAELQISF NDQDRAVPHF ATGLIGRDNA IARHGIHGLY 600 WLFNIDVASA WLVQGVNTIY LKQPRSQSPF QGLMYDYLRL EGPCGC* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 3.0e-31 | 342 | 441 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 2.0e-54 | 453 | 641 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 4.0e-72 | 18 | 308 | 296 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-102 | 3 | 211 | 209 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD10227.1 | 0 | 1 | 646 | 1 | 645 | putative MYST1 [Oryza sativa Japonica Group] |
GenBank | EEE69123.1 | 0 | 1 | 641 | 660 | 1299 | hypothetical protein OsJ_28233 [Oryza sativa Japonica Group] |
RefSeq | NP_001062464.1 | 0 | 1 | 645 | 14 | 657 | Os08g0554100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001062465.1 | 0 | 3 | 646 | 4 | 606 | Os08g0554300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002445711.1 | 0 | 1 | 646 | 14 | 663 | hypothetical protein SORBIDRAFT_07g024560 [Sorghum bicolor] |