y
Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi5g22310.1 |
Family | CBM53 |
Protein Properties | Length: 1286 Molecular Weight: 145067 Isoelectric Point: 4.9564 |
Chromosome | Chromosome/Scaffold: 5 Start: 24719443 End: 24727511 |
Description | starch synthase 3 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM53 | 403 | 486 | 5.4e-31 |
SVIDLYLNRSITALASESTILIKGAFNGWRWNLFTEKMHRSELAGDWWCCKLHIPKQAYRLDFVFFNGDTVYENNNYNDFFIEI | |||
CBM53 | 577 | 667 | 1.1e-35 |
GDRVRLYYNRNLRPLMHSNEIWLHGGYNNWTDALSIAERLVKSHEKDGDWWYANVTLPKSALVLDWVFADGPPGNARNYDNNGKRDFHAVV | |||
CBM53 | 739 | 827 | 7.4e-36 |
GTTVDVLYNPSNTVLNGSPEVWFRCSFNRWTHPSGPLPPQKMVNAENGSHLQATVRVPLDAYMMDFVFSESEEGGTYDNRNGMDYHIPV | |||
GT5 | 838 | 1280 | 0 |
HIVHIAVEMAPIAKVGGLGDVVTSLSRAIQDLGHKVEVIIPKYDCLNLSNVKDLHCCQSFTWSGTEIKVWFGKVEDISVYFLEPQNGMFWVGCVYGRNDE SRFGFFCHSALEFLLQSGSSPDIIHCHDWSSAPVAWLYKQQYVHNGLPNGRVVFTIHNLEFGANQIGKAMAHCDKATTVSYTYSREVSRHGSIAPHYFKF HGIRNGIDSDIWDPYNDNFIPVHYTSDNVVEGKSSAKKALQEKLGLHQTDSPVVGIISRLTAQKGIHLIKHAIYRTLERNGQVVLLGSAPDHRIQSDFTN LARKLHGEFDGRVKLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPIVRKTGGLYDTVFDVDDDKERAREQGLEPNGFSFEGADINGVD YALDRAITTWYDARDWFHSLCKRVMEQDWSWNRPALDYMELYH |
Full Sequence |
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Protein Sequence Length: 1286 Download |
MEMALRAQSP LCSRSRPVLV VRPANAAAAL AQPIVKCSRF TRSRLVRCMV ASSDYPKRNP 60 RRSSTPKPKG TASRGYAPRP AAESSTKKIE QSSTDEGDLA RSNVMLGSAG IEQTGTAEES 120 SEVDLSGNVP SSEALEGVNE TENEEEIDQK LPPALSSTSM DAESISEAAD QTSTVEEASE 180 VDFSGNVSSS TALEGVNEAE AEEKVDQKQT SALASTSMDV ESIDRELEEY RGKISALVAS 240 NPGPSSLASN QGQDKPIFGV HEQDKSVINF HEQGISIVDV SKQSQLAVGV TEEDPTKQTT 300 IIGEQDIAEE AVEDIDSKFF EDGQLALSED DAGTSKYAQE EPSVAGDQLR ISEDGHDEPE 360 IQELVQKDVN LQVLKRRLEE LANENYSIGY KCFVFPEIVK ADSVIDLYLN RSITALASES 420 TILIKGAFNG WRWNLFTEKM HRSELAGDWW CCKLHIPKQA YRLDFVFFNG DTVYENNNYN 480 DFFIEIESDM DEHSFEDFLV HEKQRELERL AAEEAERERQ AEEERRKEEE RAIMEAYRAQ 540 AKAEVETMKN RLQHVLGSAS RHMDNLWYIE PSTYKGGDRV RLYYNRNLRP LMHSNEIWLH 600 GGYNNWTDAL SIAERLVKSH EKDGDWWYAN VTLPKSALVL DWVFADGPPG NARNYDNNGK 660 RDFHAVVSKS ISEDFFWVEE EHRIFKRFQR ERKEREDADR RKAEITAKMK AEMKEKTMRE 720 FLLSQKHIVY TEPLEVRAGT TVDVLYNPSN TVLNGSPEVW FRCSFNRWTH PSGPLPPQKM 780 VNAENGSHLQ ATVRVPLDAY MMDFVFSESE EGGTYDNRNG MDYHIPVSDS MAKEPPMHIV 840 HIAVEMAPIA KVGGLGDVVT SLSRAIQDLG HKVEVIIPKY DCLNLSNVKD LHCCQSFTWS 900 GTEIKVWFGK VEDISVYFLE PQNGMFWVGC VYGRNDESRF GFFCHSALEF LLQSGSSPDI 960 IHCHDWSSAP VAWLYKQQYV HNGLPNGRVV FTIHNLEFGA NQIGKAMAHC DKATTVSYTY 1020 SREVSRHGSI APHYFKFHGI RNGIDSDIWD PYNDNFIPVH YTSDNVVEGK SSAKKALQEK 1080 LGLHQTDSPV VGIISRLTAQ KGIHLIKHAI YRTLERNGQV VLLGSAPDHR IQSDFTNLAR 1140 KLHGEFDGRV KLCLTYDEPL SHLIYAGADF ILVPSIFEPC GLTQLTAMRY GSIPIVRKTG 1200 GLYDTVFDVD DDKERAREQG LEPNGFSFEG ADINGVDYAL DRAITTWYDA RDWFHSLCKR 1260 VMEQDWSWNR PALDYMELYH SARKN* 1320 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02316 | PLN02316 | 1.0e-13 | 64 | 163 | 100 | + synthase/transferase | ||
TIGR02095 | glgA | 1.0e-150 | 837 | 1282 | 489 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
PRK00654 | glgA | 8.0e-161 | 837 | 1285 | 487 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 2.0e-168 | 838 | 1281 | 493 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
PLN02316 | PLN02316 | 0 | 239 | 1284 | 1047 | + synthase/transferase |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
GO:2001070 | starch binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABY56823.2 | 0 | 1 | 1285 | 1 | 1271 | starch synthase IIIb precursor [Triticum aestivum] |
GenBank | ACY56216.1 | 0 | 1 | 1285 | 1 | 1216 | soluble starch synthase III-1 [Oryza sativa Japonica Group] |
GenBank | ACY56218.1 | 0 | 1 | 1285 | 1 | 1216 | soluble starch synthase III-1 [Oryza sativa Indica Group] |
GenBank | ACY56219.1 | 0 | 1 | 1285 | 1 | 1216 | soluble starch synthase III-1 [Oryza sativa Indica Group] |
GenBank | ACY56222.1 | 0 | 1 | 1285 | 1 | 1216 | soluble starch synthase III-1 [Oryza sativa Indica Group] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d1j_A | 0 | 837 | 1280 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 837 | 1280 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 837 | 1280 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4t_A | 0 | 837 | 1280 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2qzs_A | 0 | 837 | 1280 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO794758 | 567 | 719 | 1284 | 0 |
HO778003 | 744 | 338 | 1080 | 0 |
GT033751 | 342 | 888 | 1229 | 0 |
HO778003 | 399 | 290 | 674 | 0.0000000000006 |
HO794758 | 109 | 568 | 674 | 4.1 |
Sequence Alignments (This image is cropped. Click for full image.) |
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