y
Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi3g35067.1 |
Family | AA7 |
Protein Properties | Length: 576 Molecular Weight: 63047.2 Isoelectric Point: 8.5165 |
Chromosome | Chromosome/Scaffold: 3 Start: 37428542 End: 37430389 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 90 | 316 | 0 |
PSPSLLLTPTTVAEVRASVACCRAHGLTVRARSGGHDYEGLSYRALRRPARRFAVLDLAALRAVRVDAARRVAHAQPGATLGELYYAVARGSRGKLGFPA GICPTVCVGGHLNGGGFGPMMRKHGLAADNVVDAEVVDAEGRLLLGRAAMGEGLFWAIRGGGGGSFGVVVSWTVRLVPVPPVVSAFTVRRLIPRGDGGEQ AIIHLLTRWQLVTHALPDDLFVKAAME |
Full Sequence |
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Protein Sequence Length: 576 Download |
MQPSFELFPV HRLLLFLLLL VTLSPPSRAQ GEGQEERGLH ESFLRCVSRL SPATADPSDL 60 VHAPADASYG PLLDSTIQNL RFASPRTPCP SPSLLLTPTT VAEVRASVAC CRAHGLTVRA 120 RSGGHDYEGL SYRALRRPAR RFAVLDLAAL RAVRVDAARR VAHAQPGATL GELYYAVARG 180 SRGKLGFPAG ICPTVCVGGH LNGGGFGPMM RKHGLAADNV VDAEVVDAEG RLLLGRAAMG 240 EGLFWAIRGG GGGSFGVVVS WTVRLVPVPP VVSAFTVRRL IPRGDGGEQA IIHLLTRWQL 300 VTHALPDDLF VKAAMEPKAD DDGGGGSLRP QVVFKSLFLG NCSGMVSQMD SHLPELGINP 360 SDCREMSWLQ SMLYFYGYTD GQPAEVLLDR TLQPKDYYKI KLDYLTSPIP AAGLAVLLSK 420 IVEEKGGSIG IDPQGGRMSE IPESDTPYAH RKGYLYNLQY FVKWGGDKNV SYEEKHLGWV 480 REVHELMTPY VSKRPRAAYI NFRDLDLGQN VDGNTRYEEA RVWGEKYFRG NFRRLAMVKG 540 EVDPEQVFWS EQSIPPLVVV GTRKRQRQDG LVSES* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 8.0e-7 | 101 | 272 | 179 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 3.0e-13 | 101 | 215 | 116 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
pfam08031 | BBE | 3.0e-16 | 498 | 555 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN34780.1 | 0 | 34 | 558 | 31 | 552 | unknown [Zea mays] |
GenBank | EAY85134.1 | 0 | 24 | 575 | 22 | 566 | hypothetical protein OsI_06489 [Oryza sativa Indica Group] |
GenBank | EAZ22357.1 | 0 | 122 | 575 | 63 | 510 | hypothetical protein OsJ_06016 [Oryza sativa Japonica Group] |
RefSeq | NP_001046387.1 | 0 | 24 | 556 | 23 | 553 | Os02g0235900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002451843.1 | 0 | 24 | 549 | 21 | 548 | hypothetical protein SORBIDRAFT_04g008542 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 4dns_B | 0 | 24 | 558 | 1 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 24 | 558 | 1 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3vte_A | 0 | 41 | 557 | 5 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsj_B | 0 | 41 | 558 | 9 | 497 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsj_A | 0 | 41 | 558 | 9 | 497 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
Signal Peptide | |||||
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Cleavage Site | |||||
29 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EG385139 | 213 | 358 | 570 | 0 |
HX128163 | 204 | 370 | 572 | 0 |
DV514342 | 317 | 238 | 553 | 0 |
EC904710 | 299 | 261 | 558 | 0 |
DR829965 | 312 | 233 | 543 | 0 |
Orthologous Group | |||||
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Species | ID | ||||
Oryza sativa | LOC_Os02g14090.1 | ||||
Panicum virgatum | Pavirv00060976m |
Sequence Alignments (This image is cropped. Click for full image.) |
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