y
Basic Information | |
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Species | Arabidopsis thaliana |
Cazyme ID | AT1G10050.1 |
Family | CBM22 |
Protein Properties | Length: 1064 Molecular Weight: 118371 Isoelectric Point: 4.8751 |
Chromosome | Chromosome/Scaffold: 1 Start: 3279270 End: 3283482 |
Description | glycosyl hydrolase family 10 protein, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 350 | 482 | 1.5e-27 |
IFLNSSFSDGLNHWSGRGCNLMLHESLADGKILPDSGTCFASASERTHKWSGIEQDITERVQRKLIYEASSVVRLSHSHHTVQATLYVQYLDQREEYIGI SSVQGTHDDWVELKGKFLLNGSPARAVVYIEGP | |||
CBM22 | 183 | 313 | 2.6e-30 |
NIIKNHDFSDGLYSWNTNGCDSFVVSSNDCNLESNAVVNNRSETWQGLEQDITDNVSPGFSYKVSASVSVSGPVLGSAQVLATLKLEHKSSATEFQLIGK TYASKDIWKTLEGTFEVSGRPDRVVFFLEGP | |||
CBM22 | 5 | 144 | 7.1e-33 |
NIVMNGDFFAGIEPWYPNGCEAFVVSSDPFSSEVMSADSSSGGYVVVTNRKETWQGLEQDITTRVASGMNYTVSTCVGVSGPFNESAEVLSTVRLEHEDS PTEYLCIGKTYASRDKWVDLEGTFSISNMPDRVVLYLEGP | |||
CBM22 | 517 | 661 | 1.9e-39 |
NIVSNSHLSDGTIEGWFPLGDCHLKVGDGSPRILPPLARDSLRKTQGYLSGRYVLATNRSGTWMGPAQTITDKVKLFVTYQVSAWVKIGSGGRTSPQDVN IALSVDGNWVNGGKVEVDDGDWHEVVGSFRIEKEAKEVMLHVQGP | |||
GH10 | 719 | 1003 | 0 |
QTRNSFPLGSCISRSNIDNEDFVDFFLNNFDWAVFGYELKWYWTEPEQGNFNYRDANEMIEFCERYNIKTRGHCIFWEVESAIQPWVQQLTGSKLEAAVE NRVTDLLTRYNGKFRHYDVNNEMLHGSFYRDRLDSDARANMFKTAHELDPLATLFLNEYHIEDGFDSRSSPEKYIKLVHKLQKKGAPVGGIGIQGHITSP VGHIVRSALDKLSTLGLPIWFTELDVSSTNEHIRGDDLEVMLWEAFAHPAVEGVMLWGFWELFMSREHSHLVNADGEVNEAGKRF |
Full Sequence |
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Protein Sequence Length: 1064 Download |
MADLNIVMNG DFFAGIEPWY PNGCEAFVVS SDPFSSEVMS ADSSSGGYVV VTNRKETWQG 60 LEQDITTRVA SGMNYTVSTC VGVSGPFNES AEVLSTVRLE HEDSPTEYLC IGKTYASRDK 120 WVDLEGTFSI SNMPDRVVLY LEGPAPGKDL LIRSVTVRSS TSSDFQETEK NTDASNVFPL 180 ALNIIKNHDF SDGLYSWNTN GCDSFVVSSN DCNLESNAVV NNRSETWQGL EQDITDNVSP 240 GFSYKVSASV SVSGPVLGSA QVLATLKLEH KSSATEFQLI GKTYASKDIW KTLEGTFEVS 300 GRPDRVVFFL EGPPPGIDLL VKSVTIHCES DNQFERSREF CSAPESDNHI FLNSSFSDGL 360 NHWSGRGCNL MLHESLADGK ILPDSGTCFA SASERTHKWS GIEQDITERV QRKLIYEASS 420 VVRLSHSHHT VQATLYVQYL DQREEYIGIS SVQGTHDDWV ELKGKFLLNG SPARAVVYIE 480 GPPPGIDVFV DHFAVKPAEK ETPSGRPYIE SHAFGMNIVS NSHLSDGTIE GWFPLGDCHL 540 KVGDGSPRIL PPLARDSLRK TQGYLSGRYV LATNRSGTWM GPAQTITDKV KLFVTYQVSA 600 WVKIGSGGRT SPQDVNIALS VDGNWVNGGK VEVDDGDWHE VVGSFRIEKE AKEVMLHVQG 660 PSPGVDLMVA GLQIFAVDRK ARLSYLRGQA DVVRKRNVCL KFSGLDPSEL SGATVKIRQT 720 RNSFPLGSCI SRSNIDNEDF VDFFLNNFDW AVFGYELKWY WTEPEQGNFN YRDANEMIEF 780 CERYNIKTRG HCIFWEVESA IQPWVQQLTG SKLEAAVENR VTDLLTRYNG KFRHYDVNNE 840 MLHGSFYRDR LDSDARANMF KTAHELDPLA TLFLNEYHIE DGFDSRSSPE KYIKLVHKLQ 900 KKGAPVGGIG IQGHITSPVG HIVRSALDKL STLGLPIWFT ELDVSSTNEH IRGDDLEVML 960 WEAFAHPAVE GVMLWGFWEL FMSREHSHLV NADGEVNEAG KRFLEIKREW LSFVDGEIED 1020 GGGLEFRGYH GSYTVEVVTS ESKYVTNFVV DKGNSPVDVI IDL* 1080 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 3.0e-21 | 5 | 148 | 147 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 4.0e-24 | 183 | 315 | 135 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 7.0e-34 | 756 | 977 | 247 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 9.0e-73 | 722 | 1007 | 306 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 2.0e-81 | 757 | 1003 | 268 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005575 | cellular_component |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
GO:0031176 | endo-1,4-beta-xylanase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172476.1 | 0 | 1 | 1063 | 1 | 1063 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana] |
RefSeq | NP_176133.1 | 0 | 161 | 1063 | 4 | 914 | RXF12; endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
RefSeq | XP_002301133.1 | 2e-30 | 2 | 339 | 332 | 674 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 5 | 1063 | 2 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 348 | 674 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1i1x_A | 4e-26 | 757 | 945 | 49 | 241 | A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form |
PDB | 1i1w_A | 4e-26 | 757 | 945 | 49 | 241 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1tux_A | 5e-25 | 757 | 945 | 49 | 241 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 1e-24 | 747 | 948 | 39 | 244 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
PDB | 1k6a_A | 3e-24 | 757 | 948 | 49 | 244 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-beta-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO850973 | 328 | 645 | 972 | 0 |
GR184067 | 268 | 726 | 993 | 0 |
EL428755 | 280 | 724 | 1003 | 0 |
EB442796 | 300 | 545 | 844 | 0 |
EB442796 | 124 | 33 | 152 | 0.00000005 |
Sequence Alignments (This image is cropped. Click for full image.) |
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