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CAZyme Information: MGYG000004599_00925
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; | |||||||||||
| CAZyme ID | MGYG000004599_00925 | |||||||||||
| CAZy Family | GH30 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 23361; End: 24701 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH30 | 38 | 388 | 4.3e-106 | 0.9649122807017544 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG5520 | XynC | 4.88e-62 | 39 | 387 | 36 | 376 | O-Glycosyl hydrolase [Cell wall/membrane/envelope biogenesis]. |
| pfam02055 | Glyco_hydro_30 | 8.95e-06 | 95 | 250 | 71 | 241 | Glycosyl hydrolase family 30 TIM-barrel domain. |
| TIGR01642 | U2AF_lg | 0.001 | 52 | 154 | 338 | 435 | U2 snRNP auxilliary factor, large subunit, splicing factor. These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QIU93962.1 | 6.32e-126 | 18 | 446 | 24 | 438 |
| QDH81064.1 | 4.81e-77 | 36 | 395 | 144 | 496 |
| AFN75320.1 | 7.37e-77 | 38 | 386 | 245 | 580 |
| ADY53099.1 | 7.24e-75 | 36 | 407 | 126 | 475 |
| ACR13841.1 | 1.96e-74 | 35 | 378 | 50 | 394 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1NOF_A | 3.28e-70 | 38 | 394 | 2 | 335 | ChainA, xylanase [Dickeya chrysanthemi],2Y24_A Chain A, XYLANASE [Dickeya chrysanthemi] |
| 5CXP_A | 1.35e-51 | 40 | 383 | 7 | 330 | X-raycrystallographic protein structure of the glycoside hydrolase family 30 subfamily 8 xylanase, Xyn30A, from Clostridium acetobutylicum [Clostridium acetobutylicum ATCC 824] |
| 4UQA_A | 4.50e-48 | 37 | 443 | 22 | 409 | ChainA, Carbohydrate Binding Family 6 [Acetivibrio thermocellus] |
| 4CKQ_A | 6.28e-48 | 37 | 443 | 22 | 409 | ChainA, Carbohydrate Binding Family 6 [Acetivibrio thermocellus],4UQ9_A Chain A, Carbohydrate Binding Family 6 [Acetivibrio thermocellus],4UQB_A Chain A, Carbohydrate Binding Family 6 [Acetivibrio thermocellus],4UQC_A Chain A, Carbohydrate Binding Family 6 [Acetivibrio thermocellus],4UQD_A Chain A, Carbohydrate Binding Family 6 [Acetivibrio thermocellus],4UQE_A Chain A, Carbohydrate Binding Family 6 [Acetivibrio thermocellus] |
| 5A6L_A | 4.61e-47 | 37 | 443 | 22 | 409 | ChainA, Carbohydrate Binding Family 6 [Acetivibrio thermocellus],5A6M_A Chain A, Carbohydrate Binding Family 6 [Acetivibrio thermocellus ATCC 27405] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q45070 | 8.55e-38 | 39 | 345 | 36 | 328 | Glucuronoxylanase XynC OS=Bacillus subtilis (strain 168) OX=224308 GN=xynC PE=1 SV=1 |
| Q6YK37 | 5.85e-36 | 48 | 384 | 46 | 366 | Glucuronoxylanase XynC OS=Bacillus subtilis OX=1423 GN=xynC PE=3 SV=2 |
| G2Q1N4 | 1.52e-11 | 38 | 385 | 28 | 414 | GH30 family xylanase OS=Myceliophthora thermophila (strain ATCC 42464 / BCRC 31852 / DSM 1799) OX=573729 GN=Xyn30A PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as LIPO
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000009 | 0.002679 | 0.997341 | 0.000002 | 0.000002 | 0.000002 |