CAZyme Information: MGYG000004513_00485

Basic Information

• Species: Victivallis sp900550905
• Lineage: Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; Victivallaceae; Victivallis; Victivallis sp900550905
• CAZyme ID: MGYG000004513_00485
• CAZy Family: GH39
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
984	MGYG000004513_11|CGC2	110806.46	8.8624

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000004513	4294613	MAG	Israel	Asia

• Gene Location: Start: 31874; End: 34828 Strand: +

Full Sequence      

MKHKLFLLLPTLIWAALPLSGSAAGTRGTLFDAAEQQPARLWKPEQKATYENGSLRLEWD
TDRNNICDMTFPKRRDRPIAAFDEANCLVELELPPNSPVNNFNVRFIDSRDEVFQWRVPL
VAGKGGKRVVKLKISPKNFFVSFRGNADGRIDFPIYFYSCATSAPRGGGKVSLALNKIDF
ESTRKTELHEARFELETGNTPRILLPGRERDLTFLLSNPGQTPLVCDATFTLQDTLRHVI
TLPKERLIIPARGKITRKPELSLPARGIWYVTLRLEREDGSYVERIRSFALMSPAGPLRT
PARTDAFLFGVCVPSISRPQLFDREAETAALCGATALRANFRWRDMERKPGLWDLSVQEK
LLKSYGKYHIEVLPILSNPPAWARRDRPNSTPDFTAWREYTGRMFRHFRGRIRFWEIWNE
PDLRGFAEFGPVDYVQLQKIAREEQRSLSPESRLLTGGFTTMLPHKGIKKGFQEYVLKHA
GDYFDIHAFHGHCGYQRYLEQIRRLLAERAGLGVTAPWYANETAVSSIGIGEQGQAETLA
RKLLFSWSEGAIGYNWYNLRNNGTDPANPEYNYGLVTEEFYPRAAYVAYNTLTTLFRGKR
FVSRLNPASGEARLLEFAGDGDRVLSLWLESASGNEQSILLRSDAERVEAVDLMGNRRNL
PVSCGQLLWNVSTTPEFLLFHNCRRLEFGGKLLSCKLPPYLLPKQASAASVSCVNPFDRP
VTMRLELGGTALSVSPATAVVTLAPGEKKMIPIELVGHGEAPVLKIRAAWPGGSAGVAEP
LPMAKWIPRHLRRGEWNFLLRQRQQVQSLFEADPANVHRLWRGAKDLSAGIRLGMADDAL
LLTVEVTDDRHIQPYHESSIWQADSIQFGFAVPGRPGMWVAGAALCDDGSAETWIWDAPG
GFAGERRDASWRIVAERRGDVTRYALTIPLDSVGLSREQLTRGIRFNLLVNDNDGEGRDG
WIQLEEGIASERDAEKFPLLVFEP

Enzyme Prediction     

No EC number prediction in MGYG000004513_00485.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH39	378	610	3.7e-16	0.6148491879350348

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd09621	CBM9_like_5	6.32e-58	798	982	3	188	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other functional domains such as glycosyl hydrolases. The CBM9 module in these architectures may be involved in binding to carbohydrates.
cd00241	DOMON_like	2.30e-09	821	962	12	156	Domon-like ligand-binding domains. DOMON-like domains can be found in all three kindgoms of life and are a diverse group of ligand binding domains that have been shown to interact with sugars and hemes. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases.
cd21510	agarase_cat	0.009	392	490	74	185	alpha-beta barrel catalytic domain of agarase, such as GH86-like endo-acting agarases identified in non-marine organisms. Typically, agarases (E.C. 3.2.1.81) are found in ocean-dwelling bacteria since agarose is a principle component of red algae cell wall polysaccharides. Agarose is a linear polymer of alternating D-galactose and 3,6-anhydro-L-galactopyranose. Endo-acting agarases, such as glycoside hydrolase 16 (GH16) and GH86 hydrolyze internal beta-1,4 linkages. GH86-like endo-acting agarase of this protein family has been identified in the human intestinal bacterium Bacteroides uniformis. This acquired metabolic pathway, as demonstrated by the prevalence of agar-specific genetic cluster called polysaccharide utilization loci (PULs), varies considerably between human populations, being much more prevalent in a Japanese sample than in North America, European, or Chinese samples. Agarase activity was also identified in the non-marine bacterium Cellvibrio sp.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AVM46276.1	1.05e-161	193	983	330	1137
AHF94342.1	3.00e-152	51	983	79	1033
AVM47149.1	9.74e-149	193	983	494	1307
AHF90198.1	3.26e-137	54	982	56	1005
AVM44759.1	1.09e-132	244	983	211	965

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000315	0.999001	0.000176	0.000179	0.000158	0.000147

TMHMM  Annotations     

There is no transmembrane helices in MGYG000004513_00485.