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CAZyme Information: MGYG000004464_00298

You are here: Home > Sequence: MGYG000004464_00298

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Barnesiella sp900542255
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Barnesiellaceae; Barnesiella; Barnesiella sp900542255
CAZyme ID MGYG000004464_00298
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
847 MGYG000004464_3|CGC1 90921.27 4.4183
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004464 2487387 MAG Israel Asia
Gene Location Start: 55592;  End: 58135  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004464_00298.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 77 269 2.9e-79 0.994535519125683

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 1.63e-14 11 380 16 341
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 2.03e-09 79 261 3 175
Amb_all domain.
TIGR04183 Por_Secre_tail 0.001 801 846 23 70
Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.
cd00063 FN3 0.004 541 596 37 93
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUT77068.1 9.34e-184 1 492 1 489
AXP82553.1 4.21e-181 20 481 118 555
QUT90477.1 3.43e-179 1 526 1 529
ALJ58404.1 3.86e-178 1 492 1 490
QNL41084.1 2.93e-176 22 481 50 521

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q0CLG7 7.54e-45 25 478 22 414
Probable pectate lyase C OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyC PE=3 SV=1
Q2UB83 4.81e-44 25 478 22 414
Probable pectate lyase C OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=plyC PE=3 SV=1
B8NQQ7 6.55e-44 25 478 22 414
Probable pectate lyase C OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=plyC PE=3 SV=1
Q5B297 4.33e-43 25 490 22 419
Probable pectate lyase C OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyC PE=3 SV=1
B0XMA2 1.97e-42 11 478 9 415
Probable pectate lyase C OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=plyC PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000274 0.999052 0.000178 0.000161 0.000150 0.000140

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004464_00298.