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CAZyme Information: MGYG000004443_01239

You are here: Home > Sequence: MGYG000004443_01239

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Coprobacteraceae; ;
CAZyme ID MGYG000004443_01239
CAZy Family CBM50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
666 MGYG000004443_46|CGC1 77010.68 5.0791
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004443 2430140 MAG Israel Asia
Gene Location Start: 10815;  End: 12815  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004443_01239.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam01476 LysM 2.72e-10 97 139 1 43
LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
cd00118 LysM 5.84e-10 96 138 2 45
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
smart00257 LysM 2.98e-09 96 138 1 44
Lysin motif.
COG3858 YaaH 3.93e-08 95 227 2 123
Spore germination protein YaaH [Cell cycle control, cell division, chromosome partitioning].
PRK10783 mltD 7.69e-08 84 189 336 442
membrane-bound lytic murein transglycosylase D; Provisional

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BCI62460.1 4.20e-210 3 666 6 654
QUT48586.1 2.96e-152 80 666 18 600
QUR46882.1 5.01e-148 70 666 21 602
QKH97147.1 5.01e-148 70 666 21 602
BBK90862.1 5.01e-148 70 666 21 602

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
O31852 5.93e-10 41 253 31 253
D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase CwlS OS=Bacillus subtilis (strain 168) OX=224308 GN=cwlS PE=1 SV=1
Q49UX4 3.64e-07 39 198 29 193
N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=sle1 PE=3 SV=1
O05495 2.76e-06 37 175 2 128
Putative sporulation-specific glycosylase YdhD OS=Bacillus subtilis (strain 168) OX=224308 GN=ydhD PE=1 SV=2
P0C1U7 8.64e-06 41 201 31 204
N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus OX=1280 GN=sle1 PE=3 SV=1
Q2FJH7 8.64e-06 41 201 31 204
N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus (strain USA300) OX=367830 GN=sle1 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000268 0.999108 0.000176 0.000150 0.000147 0.000136

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004443_01239.